Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02518

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02516 and CCNA_02517 are separated by 197 nucleotidesCCNA_02517 and CCNA_02518 are separated by 67 nucleotidesCCNA_02518 and CCNA_02519 are separated by 5 nucleotides CCNA_02516: CCNA_02516 - glutathione S-transferase, at 2,666,167 to 2,666,892 _02516 CCNA_02517: CCNA_02517 - hypothetical protein, at 2,667,090 to 2,667,611 _02517 CCNA_02518: CCNA_02518 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, at 2,667,679 to 2,669,175 _02518 CCNA_02519: CCNA_02519 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A, at 2,669,181 to 2,670,650 _02519 Position (kb) 2667 2668 2669 2670Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2666.758 kb on - strand, within CCNA_02516at 2666.762 kb on + strand, within CCNA_02516at 2666.762 kb on + strand, within CCNA_02516at 2666.762 kb on + strand, within CCNA_02516at 2666.770 kb on - strand, within CCNA_02516at 2666.770 kb on - strand, within CCNA_02516at 2666.770 kb on - strand, within CCNA_02516at 2666.791 kb on - strand, within CCNA_02516at 2666.804 kb on - strand, within CCNA_02516at 2666.809 kb on + strand, within CCNA_02516at 2666.812 kb on - strand, within CCNA_02516at 2666.822 kb on - strandat 2666.869 kb on - strandat 2666.896 kb on - strandat 2666.981 kb on + strandat 2666.989 kb on - strandat 2666.995 kb on + strandat 2667.005 kb on - strandat 2667.005 kb on - strandat 2667.018 kb on - strandat 2667.023 kb on + strandat 2667.023 kb on + strandat 2667.052 kb on + strandat 2667.060 kb on + strandat 2667.060 kb on + strandat 2667.060 kb on - strandat 2667.068 kb on - strandat 2667.071 kb on + strandat 2667.144 kb on + strand, within CCNA_02517at 2667.168 kb on + strand, within CCNA_02517at 2667.168 kb on + strand, within CCNA_02517at 2667.168 kb on + strand, within CCNA_02517at 2667.168 kb on + strand, within CCNA_02517at 2667.176 kb on - strand, within CCNA_02517at 2667.176 kb on - strand, within CCNA_02517at 2667.176 kb on - strand, within CCNA_02517at 2667.176 kb on - strand, within CCNA_02517at 2667.176 kb on - strand, within CCNA_02517at 2667.176 kb on - strand, within CCNA_02517at 2667.216 kb on + strand, within CCNA_02517at 2667.285 kb on + strand, within CCNA_02517at 2667.312 kb on - strand, within CCNA_02517at 2667.321 kb on - strand, within CCNA_02517at 2667.354 kb on + strand, within CCNA_02517at 2667.368 kb on + strand, within CCNA_02517at 2667.450 kb on - strand, within CCNA_02517at 2667.460 kb on - strand, within CCNA_02517at 2667.501 kb on - strand, within CCNA_02517at 2667.579 kb on + strandat 2667.587 kb on - strandat 2667.594 kb on - strandat 2667.650 kb on - strandat 2667.659 kb on + strandat 2667.660 kb on - strandat 2667.664 kb on + strandat 2669.190 kb on - strandat 2669.212 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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2,666,758 - CCNA_02516 0.81 +0.1
2,666,762 + CCNA_02516 0.82 +1.7
2,666,762 + CCNA_02516 0.82 -1.3
2,666,762 + CCNA_02516 0.82 +0.4
2,666,770 - CCNA_02516 0.83 -0.5
2,666,770 - CCNA_02516 0.83 +1.3
2,666,770 - CCNA_02516 0.83 +1.4
2,666,791 - CCNA_02516 0.86 +1.2
2,666,804 - CCNA_02516 0.88 -1.2
2,666,809 + CCNA_02516 0.88 -0.3
2,666,812 - CCNA_02516 0.89 +0.1
2,666,822 - +1.2
2,666,869 - +1.4
2,666,896 - +1.6
2,666,981 + -2.5
2,666,989 - -0.8
2,666,995 + -0.4
2,667,005 - -2.3
2,667,005 - +2.2
2,667,018 - -0.9
2,667,023 + +0.2
2,667,023 + +2.4
2,667,052 + +1.9
2,667,060 + +1.4
2,667,060 + -2.6
2,667,060 - -1.3
2,667,068 - +1.8
2,667,071 + +2.0
2,667,144 + CCNA_02517 0.10 -0.2
2,667,168 + CCNA_02517 0.15 +0.7
2,667,168 + CCNA_02517 0.15 -0.6
2,667,168 + CCNA_02517 0.15 +2.3
2,667,168 + CCNA_02517 0.15 +2.8
2,667,176 - CCNA_02517 0.16 +0.0
2,667,176 - CCNA_02517 0.16 -1.4
2,667,176 - CCNA_02517 0.16 +2.1
2,667,176 - CCNA_02517 0.16 -1.8
2,667,176 - CCNA_02517 0.16 +2.9
2,667,176 - CCNA_02517 0.16 +0.9
2,667,216 + CCNA_02517 0.24 -0.2
2,667,285 + CCNA_02517 0.37 +2.2
2,667,312 - CCNA_02517 0.43 +1.2
2,667,321 - CCNA_02517 0.44 -1.3
2,667,354 + CCNA_02517 0.51 +0.6
2,667,368 + CCNA_02517 0.53 +0.3
2,667,450 - CCNA_02517 0.69 -1.4
2,667,460 - CCNA_02517 0.71 +0.1
2,667,501 - CCNA_02517 0.79 +0.5
2,667,579 + -1.8
2,667,587 - +1.4
2,667,594 - -2.0
2,667,650 - +0.3
2,667,659 + -1.6
2,667,660 - -0.2
2,667,664 + +1.9
2,669,190 - +0.4
2,669,212 - +1.3

Or see this region's nucleotide sequence