Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01791

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01789 and CCNA_01790 are separated by 139 nucleotidesCCNA_01790 and CCNA_01791 are separated by 115 nucleotidesCCNA_01791 and CCNA_01792 are separated by 114 nucleotidesCCNA_01792 and CCNA_01793 are separated by 123 nucleotides CCNA_01789: CCNA_01789 - acetyltransferase, GNAT family, at 1,916,649 to 1,917,164 _01789 CCNA_01790: CCNA_01790 - protein translocase subunit secG, at 1,917,304 to 1,917,771 _01790 CCNA_01791: CCNA_01791 - CTP synthase, at 1,917,887 to 1,919,539 _01791 CCNA_01792: CCNA_01792 - LSU ribosomal protein L32P, at 1,919,654 to 1,919,836 _01792 CCNA_01793: CCNA_01793 - aspartate protease, at 1,919,960 to 1,920,958 _01793 Position (kb) 1917 1918 1919 1920Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1916.897 kb on - strand, within CCNA_01789at 1916.897 kb on - strand, within CCNA_01789at 1916.927 kb on + strand, within CCNA_01789at 1916.927 kb on + strand, within CCNA_01789at 1916.949 kb on + strand, within CCNA_01789at 1916.971 kb on + strand, within CCNA_01789at 1916.971 kb on + strand, within CCNA_01789at 1916.979 kb on - strand, within CCNA_01789at 1916.979 kb on - strand, within CCNA_01789at 1916.979 kb on - strand, within CCNA_01789at 1917.053 kb on + strand, within CCNA_01789at 1917.053 kb on + strand, within CCNA_01789at 1917.053 kb on + strand, within CCNA_01789at 1917.061 kb on - strand, within CCNA_01789at 1917.078 kb on - strand, within CCNA_01789at 1917.102 kb on + strand, within CCNA_01789at 1917.105 kb on - strand, within CCNA_01789at 1917.105 kb on - strand, within CCNA_01789at 1917.154 kb on - strandat 1917.176 kb on - strandat 1917.193 kb on + strandat 1917.528 kb on + strand, within CCNA_01790at 1917.528 kb on + strand, within CCNA_01790at 1917.556 kb on + strand, within CCNA_01790at 1917.570 kb on + strand, within CCNA_01790at 1917.630 kb on + strand, within CCNA_01790at 1917.675 kb on + strand, within CCNA_01790at 1917.683 kb on - strand, within CCNA_01790at 1917.697 kb on + strand, within CCNA_01790at 1917.720 kb on - strand, within CCNA_01790at 1917.720 kb on - strand, within CCNA_01790at 1917.733 kb on + strandat 1917.765 kb on + strandat 1917.767 kb on - strandat 1917.767 kb on - strandat 1917.782 kb on - strandat 1917.841 kb on + strandat 1919.998 kb on + strandat 1920.019 kb on + strandat 1920.027 kb on - strandat 1920.028 kb on - strandat 1920.045 kb on - strandat 1920.104 kb on - strand, within CCNA_01793at 1920.138 kb on - strand, within CCNA_01793at 1920.199 kb on - strand, within CCNA_01793at 1920.220 kb on + strand, within CCNA_01793at 1920.225 kb on + strand, within CCNA_01793at 1920.244 kb on + strand, within CCNA_01793at 1920.349 kb on + strand, within CCNA_01793at 1920.352 kb on - strand, within CCNA_01793at 1920.425 kb on - strand, within CCNA_01793at 1920.467 kb on - strand, within CCNA_01793at 1920.486 kb on + strand, within CCNA_01793at 1920.494 kb on - strand, within CCNA_01793

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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1,916,897 - CCNA_01789 0.48 +1.7
1,916,897 - CCNA_01789 0.48 +0.9
1,916,927 + CCNA_01789 0.54 -1.2
1,916,927 + CCNA_01789 0.54 +2.0
1,916,949 + CCNA_01789 0.58 -0.3
1,916,971 + CCNA_01789 0.62 +1.0
1,916,971 + CCNA_01789 0.62 +0.4
1,916,979 - CCNA_01789 0.64 +0.9
1,916,979 - CCNA_01789 0.64 -1.1
1,916,979 - CCNA_01789 0.64 +2.0
1,917,053 + CCNA_01789 0.78 +2.2
1,917,053 + CCNA_01789 0.78 -0.4
1,917,053 + CCNA_01789 0.78 -3.5
1,917,061 - CCNA_01789 0.80 +1.1
1,917,078 - CCNA_01789 0.83 +0.9
1,917,102 + CCNA_01789 0.88 -2.5
1,917,105 - CCNA_01789 0.88 -2.8
1,917,105 - CCNA_01789 0.88 +0.5
1,917,154 - +2.4
1,917,176 - -1.8
1,917,193 + +0.4
1,917,528 + CCNA_01790 0.48 +1.4
1,917,528 + CCNA_01790 0.48 -0.9
1,917,556 + CCNA_01790 0.54 +0.3
1,917,570 + CCNA_01790 0.57 -2.0
1,917,630 + CCNA_01790 0.70 -0.7
1,917,675 + CCNA_01790 0.79 -1.9
1,917,683 - CCNA_01790 0.81 -2.0
1,917,697 + CCNA_01790 0.84 -0.4
1,917,720 - CCNA_01790 0.89 -0.5
1,917,720 - CCNA_01790 0.89 -1.0
1,917,733 + +0.1
1,917,765 + -2.7
1,917,767 - -2.2
1,917,767 - +1.5
1,917,782 - +0.5
1,917,841 + +0.3
1,919,998 + +0.3
1,920,019 + -2.0
1,920,027 - -0.3
1,920,028 - -0.6
1,920,045 - +0.5
1,920,104 - CCNA_01793 0.14 +3.3
1,920,138 - CCNA_01793 0.18 +0.0
1,920,199 - CCNA_01793 0.24 +0.7
1,920,220 + CCNA_01793 0.26 -2.8
1,920,225 + CCNA_01793 0.27 +0.5
1,920,244 + CCNA_01793 0.28 +1.3
1,920,349 + CCNA_01793 0.39 +1.8
1,920,352 - CCNA_01793 0.39 +0.7
1,920,425 - CCNA_01793 0.47 -1.5
1,920,467 - CCNA_01793 0.51 -2.1
1,920,486 + CCNA_01793 0.53 -0.5
1,920,494 - CCNA_01793 0.53 +1.8

Or see this region's nucleotide sequence