Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01789 and CCNA_01790 are separated by 139 nucleotides CCNA_01790 and CCNA_01791 are separated by 115 nucleotides CCNA_01791 and CCNA_01792 are separated by 114 nucleotides CCNA_01792 and CCNA_01793 are separated by 123 nucleotides
CCNA_01789: CCNA_01789 - acetyltransferase, GNAT family, at 1,916,649 to 1,917,164
_01789
CCNA_01790: CCNA_01790 - protein translocase subunit secG, at 1,917,304 to 1,917,771
_01790
CCNA_01791: CCNA_01791 - CTP synthase, at 1,917,887 to 1,919,539
_01791
CCNA_01792: CCNA_01792 - LSU ribosomal protein L32P, at 1,919,654 to 1,919,836
_01792
CCNA_01793: CCNA_01793 - aspartate protease, at 1,919,960 to 1,920,958
_01793
Position (kb)
1917
1918
1919
1920 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1916.897 kb on - strand, within CCNA_01789 at 1916.897 kb on - strand, within CCNA_01789 at 1916.927 kb on + strand, within CCNA_01789 at 1916.927 kb on + strand, within CCNA_01789 at 1916.949 kb on + strand, within CCNA_01789 at 1916.971 kb on + strand, within CCNA_01789 at 1916.971 kb on + strand, within CCNA_01789 at 1916.979 kb on - strand, within CCNA_01789 at 1916.979 kb on - strand, within CCNA_01789 at 1916.979 kb on - strand, within CCNA_01789 at 1917.053 kb on + strand, within CCNA_01789 at 1917.053 kb on + strand, within CCNA_01789 at 1917.053 kb on + strand, within CCNA_01789 at 1917.061 kb on - strand, within CCNA_01789 at 1917.078 kb on - strand, within CCNA_01789 at 1917.102 kb on + strand, within CCNA_01789 at 1917.105 kb on - strand, within CCNA_01789 at 1917.105 kb on - strand, within CCNA_01789 at 1917.154 kb on - strand at 1917.176 kb on - strand at 1917.193 kb on + strand at 1917.528 kb on + strand, within CCNA_01790 at 1917.528 kb on + strand, within CCNA_01790 at 1917.556 kb on + strand, within CCNA_01790 at 1917.570 kb on + strand, within CCNA_01790 at 1917.630 kb on + strand, within CCNA_01790 at 1917.675 kb on + strand, within CCNA_01790 at 1917.683 kb on - strand, within CCNA_01790 at 1917.697 kb on + strand, within CCNA_01790 at 1917.720 kb on - strand, within CCNA_01790 at 1917.720 kb on - strand, within CCNA_01790 at 1917.733 kb on + strand at 1917.765 kb on + strand at 1917.767 kb on - strand at 1917.767 kb on - strand at 1917.782 kb on - strand at 1917.841 kb on + strand at 1919.998 kb on + strand at 1920.019 kb on + strand at 1920.027 kb on - strand at 1920.028 kb on - strand at 1920.045 kb on - strand at 1920.104 kb on - strand, within CCNA_01793 at 1920.138 kb on - strand, within CCNA_01793 at 1920.199 kb on - strand, within CCNA_01793 at 1920.220 kb on + strand, within CCNA_01793 at 1920.225 kb on + strand, within CCNA_01793 at 1920.244 kb on + strand, within CCNA_01793 at 1920.349 kb on + strand, within CCNA_01793 at 1920.352 kb on - strand, within CCNA_01793 at 1920.425 kb on - strand, within CCNA_01793 at 1920.467 kb on - strand, within CCNA_01793 at 1920.486 kb on + strand, within CCNA_01793 at 1920.494 kb on - strand, within CCNA_01793
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 1,916,897 - CCNA_01789 0.48 +1.7 1,916,897 - CCNA_01789 0.48 +0.9 1,916,927 + CCNA_01789 0.54 -1.2 1,916,927 + CCNA_01789 0.54 +2.0 1,916,949 + CCNA_01789 0.58 -0.3 1,916,971 + CCNA_01789 0.62 +1.0 1,916,971 + CCNA_01789 0.62 +0.4 1,916,979 - CCNA_01789 0.64 +0.9 1,916,979 - CCNA_01789 0.64 -1.1 1,916,979 - CCNA_01789 0.64 +2.0 1,917,053 + CCNA_01789 0.78 +2.2 1,917,053 + CCNA_01789 0.78 -0.4 1,917,053 + CCNA_01789 0.78 -3.5 1,917,061 - CCNA_01789 0.80 +1.1 1,917,078 - CCNA_01789 0.83 +0.9 1,917,102 + CCNA_01789 0.88 -2.5 1,917,105 - CCNA_01789 0.88 -2.8 1,917,105 - CCNA_01789 0.88 +0.5 1,917,154 - +2.4 1,917,176 - -1.8 1,917,193 + +0.4 1,917,528 + CCNA_01790 0.48 +1.4 1,917,528 + CCNA_01790 0.48 -0.9 1,917,556 + CCNA_01790 0.54 +0.3 1,917,570 + CCNA_01790 0.57 -2.0 1,917,630 + CCNA_01790 0.70 -0.7 1,917,675 + CCNA_01790 0.79 -1.9 1,917,683 - CCNA_01790 0.81 -2.0 1,917,697 + CCNA_01790 0.84 -0.4 1,917,720 - CCNA_01790 0.89 -0.5 1,917,720 - CCNA_01790 0.89 -1.0 1,917,733 + +0.1 1,917,765 + -2.7 1,917,767 - -2.2 1,917,767 - +1.5 1,917,782 - +0.5 1,917,841 + +0.3 1,919,998 + +0.3 1,920,019 + -2.0 1,920,027 - -0.3 1,920,028 - -0.6 1,920,045 - +0.5 1,920,104 - CCNA_01793 0.14 +3.3 1,920,138 - CCNA_01793 0.18 +0.0 1,920,199 - CCNA_01793 0.24 +0.7 1,920,220 + CCNA_01793 0.26 -2.8 1,920,225 + CCNA_01793 0.27 +0.5 1,920,244 + CCNA_01793 0.28 +1.3 1,920,349 + CCNA_01793 0.39 +1.8 1,920,352 - CCNA_01793 0.39 +0.7 1,920,425 - CCNA_01793 0.47 -1.5 1,920,467 - CCNA_01793 0.51 -2.1 1,920,486 + CCNA_01793 0.53 -0.5 1,920,494 - CCNA_01793 0.53 +1.8
Or see this region's nucleotide sequence