Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01758

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01756 and CCNA_01757 are separated by 63 nucleotidesCCNA_01757 and CCNA_01758 are separated by 44 nucleotidesCCNA_01758 and CCNA_01759 overlap by 4 nucleotides CCNA_01756: CCNA_01756 - hypothetical protein, at 1,883,535 to 1,883,654 _01756 CCNA_01757: CCNA_01757 - dimethyladenosine transferase, at 1,883,718 to 1,884,548 _01757 CCNA_01758: CCNA_01758 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,884,593 to 1,885,594 _01758 CCNA_01759: CCNA_01759 - peptidyl-prolyl cis-trans isomerase, at 1,885,591 to 1,886,940 _01759 Position (kb) 1884 1885 1886Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1883.631 kb on + strand, within CCNA_01756at 1883.636 kb on + strand, within CCNA_01756at 1883.676 kb on - strandat 1883.726 kb on - strandat 1883.738 kb on + strandat 1883.943 kb on - strand, within CCNA_01757at 1884.027 kb on - strand, within CCNA_01757at 1884.037 kb on - strand, within CCNA_01757at 1884.357 kb on - strand, within CCNA_01757at 1884.383 kb on - strand, within CCNA_01757at 1884.556 kb on + strandat 1884.556 kb on + strandat 1884.586 kb on - strandat 1884.598 kb on - strandat 1884.598 kb on - strandat 1884.598 kb on - strandat 1885.596 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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1,883,631 + CCNA_01756 0.80 -0.6
1,883,636 + CCNA_01756 0.84 -2.9
1,883,676 - +2.1
1,883,726 - +0.2
1,883,738 + -1.0
1,883,943 - CCNA_01757 0.27 -1.7
1,884,027 - CCNA_01757 0.37 -1.9
1,884,037 - CCNA_01757 0.38 -2.3
1,884,357 - CCNA_01757 0.77 -1.2
1,884,383 - CCNA_01757 0.80 -1.2
1,884,556 + -1.3
1,884,556 + +1.6
1,884,586 - -0.5
1,884,598 - +0.0
1,884,598 - +0.7
1,884,598 - -1.1
1,885,596 - -0.4

Or see this region's nucleotide sequence