Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01243

Experiment: L-Alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Alanine (C)
1,368,310	+		CCNA_01242	0.44	+0.1
1,368,313	-		CCNA_01242	0.44	-0.3
1,368,318	-		CCNA_01242	0.45	-0.2
1,368,318	-		CCNA_01242	0.45	-0.3
1,368,333	-		CCNA_01242	0.45	-0.2
1,368,380	-		CCNA_01242	0.48	-0.1
1,368,423	-		CCNA_01242	0.51	-0.5
1,368,436	-		CCNA_01242	0.52	-0.3
1,368,437	-		CCNA_01242	0.52	-0.3
1,368,460	+		CCNA_01242	0.53	+0.1
1,368,494	+		CCNA_01242	0.56	-0.6
1,368,520	+		CCNA_01242	0.57	-0.9
1,368,528	-		CCNA_01242	0.58	-0.4
1,368,547	+		CCNA_01242	0.59	-1.8
1,368,550	-		CCNA_01242	0.59	-0.7
1,368,550	-		CCNA_01242	0.59	+0.0
1,368,573	-		CCNA_01242	0.61	-0.3
1,368,581	-		CCNA_01242	0.61	-0.6
1,368,586	+		CCNA_01242	0.61	-0.4
1,368,613	+		CCNA_01242	0.63	-0.3
1,368,613	+		CCNA_01242	0.63	-0.4
1,368,627	+		CCNA_01242	0.64	-0.7
1,368,628	+		CCNA_01242	0.64	-0.3
1,368,661	+		CCNA_01242	0.66	-0.2
1,368,714	+		CCNA_01242	0.69	+0.8
1,368,738	+		CCNA_01242	0.71	+0.4
1,368,746	-		CCNA_01242	0.71	-0.4
1,368,799	+		CCNA_01242	0.75	-0.2
1,368,802	-		CCNA_01242	0.75	-0.3
1,368,807	-		CCNA_01242	0.75	-0.3
1,368,807	-		CCNA_01242	0.75	-0.5
1,368,807	-		CCNA_01242	0.75	-0.7
1,368,880	+		CCNA_01242	0.80	+0.5
1,368,897	+		CCNA_01242	0.81	-1.3
1,368,918	+		CCNA_01242	0.82	-1.4
1,368,918	+		CCNA_01242	0.82	+0.6
1,368,926	-		CCNA_01242	0.83	-0.3
1,368,926	-		CCNA_01242	0.83	-0.7
1,368,946	+		CCNA_01242	0.84	-1.9
1,368,946	+		CCNA_01242	0.84	-0.3
1,368,954	-		CCNA_01242	0.84	-0.2
1,368,959	-		CCNA_01242	0.85	+0.0
1,368,964	-		CCNA_01242	0.85	+0.2
1,368,969	-		CCNA_01242	0.85	-0.4
1,369,013	+		CCNA_01242	0.88	-0.3
1,369,035	+		CCNA_01242	0.89	-0.5
1,369,052	-				-0.6
1,369,075	-				-0.3
1,369,099	-				-0.4
1,369,100	-				-0.3
1,369,109	-				-0.2
1,369,119	-				-0.4
1,369,129	-				-0.6
1,369,134	-				-0.3
1,369,191	+				-0.9
1,369,202	+				+0.9
1,369,202	+				-0.1
1,369,223	+				+0.5
1,369,238	+				-0.2
1,369,251	-				-0.2
1,369,259	-				-0.4
1,369,262	+				+0.0
1,369,270	-				-1.1
1,369,275	+				-0.0
1,369,283	-				-0.1
1,369,320	+				-0.7
1,369,327	+				+0.2
1,369,335	-				-2.0
1,369,335	-				-4.0
1,369,335	-				-3.0
1,369,348	-				-0.2
1,369,374	-				-2.3
1,369,374	-				-1.7
1,369,395	+				-2.7
1,369,417	-				-1.3
1,369,432	-				-1.2
1,369,499	-				+1.1
1,369,508	-				+1.3
1,369,534	+				+1.2
1,369,544	+				-1.3
1,369,670	+		CCNA_01243	0.15	+0.4
1,369,681	+		CCNA_01243	0.15	-0.9
1,369,725	+		CCNA_01243	0.17	-2.0
1,369,725	+		CCNA_01243	0.17	+1.5
1,369,725	+		CCNA_01243	0.17	-0.1
1,369,725	+		CCNA_01243	0.17	+0.7
1,369,725	+		CCNA_01243	0.17	+2.4
1,369,725	+		CCNA_01243	0.17	-0.6
1,369,725	+		CCNA_01243	0.17	+1.7
1,369,733	-		CCNA_01243	0.17	-2.0
1,369,733	-		CCNA_01243	0.17	+1.6
1,369,733	-		CCNA_01243	0.17	+0.9
1,369,733	-		CCNA_01243	0.17	-0.5
1,369,752	+		CCNA_01243	0.18	-1.1
1,369,752	+		CCNA_01243	0.18	-1.8
1,369,760	-		CCNA_01243	0.19	-0.5
1,369,760	-		CCNA_01243	0.19	+1.0
1,369,760	-		CCNA_01243	0.19	+2.9
1,369,773	+		CCNA_01243	0.19	+0.4
1,369,812	+		CCNA_01243	0.21	-0.9
1,369,845	+		CCNA_01243	0.22	+2.7
1,369,912	+		CCNA_01243	0.25	-0.8
1,369,946	+		CCNA_01243	0.26	-2.1
1,369,966	+		CCNA_01243	0.27	+1.1
1,369,966	+		CCNA_01243	0.27	+0.9
1,370,020	+		CCNA_01243	0.29	-3.0
1,370,066	+		CCNA_01243	0.31	-2.5
1,370,071	-		CCNA_01243	0.31	+1.8
1,370,071	-		CCNA_01243	0.31	-1.7
1,370,096	-		CCNA_01243	0.32	-0.8
1,370,107	+		CCNA_01243	0.33	+1.0
1,370,107	+		CCNA_01243	0.33	-1.3
1,370,107	+		CCNA_01243	0.33	+0.8
1,370,115	-		CCNA_01243	0.33	-1.8
1,370,115	-		CCNA_01243	0.33	+2.1
1,370,158	+		CCNA_01243	0.35	+2.4
1,370,202	+		CCNA_01243	0.36	+1.2
1,370,202	+		CCNA_01243	0.36	+1.5
1,370,210	-		CCNA_01243	0.37	+2.1
1,370,210	-		CCNA_01243	0.37	-0.8
1,370,210	-		CCNA_01243	0.37	-1.1
1,370,249	+		CCNA_01243	0.38	+0.1
1,370,249	+		CCNA_01243	0.38	+0.6
1,370,249	+		CCNA_01243	0.38	+0.4
1,370,249	+		CCNA_01243	0.38	+0.4
1,370,249	+		CCNA_01243	0.38	+1.1
1,370,257	-		CCNA_01243	0.39	-0.4
1,370,257	-		CCNA_01243	0.39	-1.6
1,370,257	-		CCNA_01243	0.39	+0.5
1,370,257	-		CCNA_01243	0.39	-1.5
1,370,257	-		CCNA_01243	0.39	-2.0
1,370,283	+		CCNA_01243	0.40	+1.3
1,370,286	-		CCNA_01243	0.40	-0.5
1,370,316	-		CCNA_01243	0.41	+3.5
1,370,345	+		CCNA_01243	0.42	-0.7
1,370,446	+		CCNA_01243	0.46	+0.3
1,370,451	+		CCNA_01243	0.46	+0.1
1,370,503	-		CCNA_01243	0.49	+1.2
1,370,503	-		CCNA_01243	0.49	+0.5
1,370,504	-		CCNA_01243	0.49	+2.5
1,370,505	+		CCNA_01243	0.49	-1.4
1,370,505	+		CCNA_01243	0.49	+1.8
1,370,505	+		CCNA_01243	0.49	+2.3
1,370,513	-		CCNA_01243	0.49	-0.5
1,370,515	-		CCNA_01243	0.49	+3.0
1,370,537	+		CCNA_01243	0.50	+1.3
1,370,555	+		CCNA_01243	0.51	-0.2
1,370,555	+		CCNA_01243	0.51	+1.0
1,370,561	+		CCNA_01243	0.51	+2.0
1,370,562	+		CCNA_01243	0.51	+1.2
1,370,563	-		CCNA_01243	0.51	+2.0
1,370,565	-		CCNA_01243	0.51	+0.6
1,370,619	+		CCNA_01243	0.53	-0.5
1,370,619	+		CCNA_01243	0.53	+1.5
1,370,622	-		CCNA_01243	0.53	+0.2
1,370,627	-		CCNA_01243	0.54	+0.7
1,370,706	+		CCNA_01243	0.57	+1.7
1,370,708	+		CCNA_01243	0.57	+1.9
1,370,715	+		CCNA_01243	0.57	+1.1
1,370,716	-		CCNA_01243	0.57	-2.1
1,370,729	-		CCNA_01243	0.58	-0.3
1,370,752	+		CCNA_01243	0.59	+2.8
1,370,760	-		CCNA_01243	0.59	+0.8
1,370,769	+		CCNA_01243	0.59	-0.7
1,370,791	+		CCNA_01243	0.60	+0.9
1,370,798	-		CCNA_01243	0.61	-0.8
1,370,825	+		CCNA_01243	0.62	-0.2
1,370,831	+		CCNA_01243	0.62	-1.5
1,370,837	+		CCNA_01243	0.62	+1.5
1,370,837	+		CCNA_01243	0.62	+0.4
1,370,837	+		CCNA_01243	0.62	+0.3
1,370,845	-		CCNA_01243	0.62	-0.4
1,370,845	-		CCNA_01243	0.62	+0.4
1,370,845	-		CCNA_01243	0.62	-0.7
1,370,872	+		CCNA_01243	0.64	+0.2
1,370,872	+		CCNA_01243	0.64	-0.0
1,370,988	-		CCNA_01243	0.68	-2.1
1,370,994	+		CCNA_01243	0.68	+0.8
1,371,015	-		CCNA_01243	0.69	-0.6
1,371,027	+		CCNA_01243	0.70	-1.6
1,371,035	-		CCNA_01243	0.70	-1.1
1,371,035	-		CCNA_01243	0.70	+0.9
1,371,062	-		CCNA_01243	0.71	-0.6
1,371,062	-		CCNA_01243	0.71	+2.0
1,371,094	-		CCNA_01243	0.72	-1.1
1,371,124	+		CCNA_01243	0.74	+1.7
1,371,188	+		CCNA_01243	0.76	-0.9
1,371,196	-		CCNA_01243	0.77	+2.1
1,371,203	+		CCNA_01243	0.77	+1.0
1,371,211	-		CCNA_01243	0.77	-0.0
1,371,223	-		CCNA_01243	0.78	-0.9
1,371,240	+		CCNA_01243	0.78	+1.4
1,371,240	+		CCNA_01243	0.78	+2.2
1,371,240	+		CCNA_01243	0.78	+0.7
1,371,240	+		CCNA_01243	0.78	+1.7
1,371,294	+		CCNA_01243	0.81	-1.4
1,371,341	+		CCNA_01243	0.82	+0.2
1,371,365	+		CCNA_01243	0.83	+0.2
1,371,370	+		CCNA_01243	0.84	-1.1
1,371,373	-		CCNA_01243	0.84	-1.6
1,371,373	-		CCNA_01243	0.84	-1.8
1,371,378	-		CCNA_01243	0.84	-2.5
1,371,378	-		CCNA_01243	0.84	-1.7
1,371,379	+		CCNA_01243	0.84	+0.2
1,371,396	+		CCNA_01243	0.85	+1.4
1,371,406	+		CCNA_01243	0.85	+1.9
1,371,407	-		CCNA_01243	0.85	+0.6
1,371,409	-		CCNA_01243	0.85	-2.5
1,371,421	+		CCNA_01243	0.86	-2.3
1,371,442	-		CCNA_01243	0.87	+1.7
1,371,539	+				-1.0
1,371,547	-				-2.2
1,371,547	-				-1.9
1,371,673	+				+2.8
1,371,673	+				+1.4
1,371,674	+				+0.7
1,371,674	+				+0.3
1,371,686	+				-0.4
1,371,710	+				-0.4
1,371,710	+				-1.3
1,371,777	-				-2.4
1,371,777	-				+2.3
1,371,784	+				+1.0
1,371,804	+				-2.8
1,371,836	+				-1.3
1,371,836	+				-0.8
1,371,843	-				-1.1
1,371,854	-				+0.6
1,371,861	+				-1.7
1,371,877	-				+2.2
1,371,896	-				-0.7
1,371,896	-				-0.2
1,371,946	+				-0.3
1,371,946	-				+0.5
1,371,946	-				-2.3
1,371,956	-		CCNA_01244	0.11	+0.7
1,372,034	-		CCNA_01244	0.30	-0.2
1,372,044	-		CCNA_01244	0.32	+2.0
1,372,044	-		CCNA_01244	0.32	+1.6
1,372,164	-		CCNA_01244	0.62	-0.0
1,372,170	+		CCNA_01244	0.63	+1.4
1,372,173	-		CCNA_01244	0.64	+0.2
1,372,185	+		CCNA_01244	0.67	-0.1
1,372,188	-		CCNA_01244	0.67	-1.3
1,372,193	-		CCNA_01244	0.69	+0.7
1,372,266	+		CCNA_01244	0.87	-0.1
1,372,266	+		CCNA_01244	0.87	-1.9
1,372,281	+				+3.3
1,372,316	-				+1.2
1,372,349	+				+1.7
1,372,350	+				+0.8
1,372,350	+				-1.0
1,372,358	-				-1.4
1,372,358	-				+2.4
1,372,385	-				-0.4
1,372,397	-				-0.2
1,372,429	+				-1.0
1,372,437	-				+0.8
1,372,437	-				-0.4
1,372,437	-				+0.6
1,372,439	+				+2.7
1,372,447	+				-0.8
1,372,447	-				+2.6
1,372,455	-				-0.9
1,372,455	-				-0.8
1,372,455	-				+0.2
1,372,465	-				-0.9
1,372,550	+				+0.9
1,372,550	-				-1.0
1,372,575	+				-2.9
1,372,576	+				-1.6
1,372,617	+				-0.6
1,372,625	-				-1.7
1,372,627	+				-1.3
1,372,627	+				-1.6
1,372,627	+				+1.6
1,372,635	-				+0.7
1,372,674	+				-2.3
1,372,745	-		CCNA_01245	0.15	+1.4
1,372,766	-		CCNA_01245	0.17	-0.1