Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01198

Experiment: L-Alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Alanine (C)
1,320,720	+		CCNA_01196	0.73	-1.8
1,320,800	+		CCNA_01196	0.77	+0.4
1,320,808	-		CCNA_01196	0.78	+0.6
1,320,824	-		CCNA_01196	0.79	-3.5
1,320,842	+		CCNA_01196	0.79	+1.2
1,320,850	-		CCNA_01196	0.80	-0.2
1,320,873	-		CCNA_01196	0.81	+0.4
1,320,875	+		CCNA_01196	0.81	+2.1
1,320,880	+		CCNA_01196	0.81	-2.5
1,320,882	+		CCNA_01196	0.81	-1.0
1,320,891	-		CCNA_01196	0.82	+1.9
1,320,954	-		CCNA_01196	0.85	-0.6
1,320,961	+		CCNA_01196	0.85	-0.1
1,320,966	+		CCNA_01196	0.86	+0.8
1,320,967	+		CCNA_01196	0.86	-0.6
1,320,971	+		CCNA_01196	0.86	-1.4
1,320,971	+		CCNA_01196	0.86	-2.9
1,320,971	+		CCNA_01196	0.86	-0.2
1,321,008	+		CCNA_01196	0.88	+0.8
1,321,013	+		CCNA_01196	0.88	+2.7
1,321,018	+		CCNA_01196	0.88	+1.0
1,321,018	+		CCNA_01196	0.88	+0.6
1,321,018	+		CCNA_01196	0.88	+3.9
1,321,026	+		CCNA_01196	0.89	+0.2
1,321,031	-		CCNA_01196	0.89	+0.6
1,321,036	-		CCNA_01196	0.89	+2.6
1,321,060	-				-0.1
1,321,067	+				+1.2
1,321,067	+				-1.9
1,321,075	-				-1.9
1,321,089	+				-0.2
1,321,092	-				+0.2
1,321,102	+				-2.6
1,321,102	+				+0.2
1,321,102	+				-1.0
1,321,102	+				+2.2
1,321,102	+				+0.5
1,321,110	-				-2.1
1,321,110	-				-1.8
1,321,123	+				+0.9
1,321,150	+				-0.3
1,321,150	+				+3.6
1,321,157	+				-0.1
1,321,174	+				-0.8
1,321,182	-				-3.0
1,321,219	+				+0.7
1,321,219	+				-3.4
1,321,227	-				+2.4
1,321,230	-				-3.3
1,321,241	+				-1.2
1,321,241	+				-0.4
1,321,285	-				-0.1
1,321,337	+		CCNA_01197	0.22	-1.4
1,321,337	+		CCNA_01197	0.22	+1.4
1,321,337	+		CCNA_01197	0.22	-1.4
1,321,345	-		CCNA_01197	0.26	+1.8
1,321,345	-		CCNA_01197	0.26	-2.0
1,321,352	+		CCNA_01197	0.30	-0.7
1,321,355	-		CCNA_01197	0.32	+0.2
1,321,357	+		CCNA_01197	0.33	-1.6
1,321,367	-		CCNA_01197	0.39	-0.6
1,321,369	+		CCNA_01197	0.40	-0.8
1,321,385	+		CCNA_01197	0.50	-0.8
1,321,411	+		CCNA_01197	0.65	-0.1
1,321,445	+		CCNA_01197	0.85	+1.4
1,321,464	-				-1.3
1,321,485	-				-1.5
1,321,485	-				+0.7
1,321,520	+				+2.6
1,321,528	-				-1.8
1,321,530	+				+1.2
1,321,574	-				-2.5
1,321,579	+				+1.3
1,321,579	+				+1.5
1,321,580	-				+3.8
1,321,587	-				-0.9
1,321,587	-				-1.5
1,321,622	+				+0.0
1,321,657	+				+2.3
1,321,661	-				+0.8
1,321,691	-				-0.2
1,321,712	+				-0.5
1,321,777	-		CCNA_01198	0.12	-1.1
1,321,780	+		CCNA_01198	0.12	-0.7
1,321,801	+		CCNA_01198	0.15	-0.5
1,321,824	-				-0.6
1,321,831	-		CCNA_01198	0.18	-0.7
1,321,866	+		CCNA_01198	0.22	-0.8
1,321,874	-		CCNA_01198	0.23	-0.1
1,321,877	+		CCNA_01198	0.23	+0.2
1,321,929	-		CCNA_01198	0.29	+3.1
1,321,942	-		CCNA_01198	0.30	-1.3
1,321,942	-		CCNA_01198	0.30	+0.7
1,321,949	+		CCNA_01198	0.31	-0.0
1,321,957	-		CCNA_01198	0.32	-3.3
1,322,005	+		CCNA_01198	0.37	-1.4
1,322,011	+		CCNA_01198	0.38	-0.8
1,322,013	-		CCNA_01198	0.38	-1.7
1,322,022	-		CCNA_01198	0.39	-3.1
1,322,025	-		CCNA_01198	0.40	-0.8
1,322,059	+		CCNA_01198	0.43	-1.1
1,322,059	-		CCNA_01198	0.43	-0.8
1,322,115	-		CCNA_01198	0.50	-1.3
1,322,186	+		CCNA_01198	0.57	+0.3
1,322,214	+		CCNA_01198	0.60	-0.9
1,322,274	+		CCNA_01198	0.67	-1.9
1,322,333	+				+0.9
1,322,381	+		CCNA_01198	0.79	-0.8
1,322,402	+		CCNA_01198	0.81	-2.4
1,322,411	-		CCNA_01198	0.82	-0.4
1,322,411	-		CCNA_01198	0.82	-1.5
1,322,412	+		CCNA_01198	0.82	+1.2
1,322,455	+		CCNA_01198	0.87	+0.4
1,322,486	+				-1.6
1,322,486	+				-0.2
1,322,496	+				-0.1
1,322,507	+				-1.4
1,322,507	+				-0.7
1,322,507	+				+1.0
1,322,507	+				-1.1
1,322,507	+				-0.6
1,322,507	+				-1.8
1,322,507	+				-0.5
1,322,507	+				-2.7
1,322,507	+				+1.0
1,322,509	+				+0.8
1,322,515	-				-0.3
1,322,515	-				-0.8
1,322,515	-				-2.1
1,322,520	-				-0.1
1,322,582	-				-1.0
1,322,621	-				-0.6
1,322,628	+				-1.8
1,322,628	+				-3.0
1,322,631	+				-1.4
1,322,646	-				-1.1
1,322,646	-				-1.0
1,322,719	+		CCNA_01199	0.17	-3.3
1,322,721	+		CCNA_01199	0.18	-1.1
1,322,789	+		CCNA_01199	0.26	-0.4
1,322,801	+		CCNA_01199	0.27	-3.9
1,322,806	+		CCNA_01199	0.27	-1.3
1,322,814	-		CCNA_01199	0.28	-0.8
1,322,814	-				-1.0
1,322,825	+		CCNA_01199	0.30	-3.0
1,322,825	+		CCNA_01199	0.30	-4.3
1,322,825	+		CCNA_01199	0.30	-2.5
1,322,830	+		CCNA_01199	0.30	+0.6
1,322,830	+		CCNA_01199	0.30	-2.7
1,322,830	+		CCNA_01199	0.30	-0.6
1,322,838	-		CCNA_01199	0.31	-3.1
1,322,944	+		CCNA_01199	0.43	-2.2
1,322,944	+		CCNA_01199	0.43	-2.0
1,322,944	+		CCNA_01199	0.43	-2.6
1,322,944	+		CCNA_01199	0.43	-3.6
1,322,944	+		CCNA_01199	0.43	-1.8
1,322,952	-		CCNA_01199	0.44	-3.1
1,322,952	-		CCNA_01199	0.44	-2.6
1,322,952	-		CCNA_01199	0.44	-2.3
1,322,960	+		CCNA_01199	0.45	-2.9
1,322,960	+		CCNA_01199	0.45	-2.9
1,322,968	-		CCNA_01199	0.46	-2.1
1,322,982	+		CCNA_01199	0.48	-2.4
1,322,990	-		CCNA_01199	0.49	-1.8
1,322,990	-		CCNA_01199	0.49	-1.6
1,322,992	+		CCNA_01199	0.49	-0.1
1,322,997	+		CCNA_01199	0.49	-2.4
1,323,002	+		CCNA_01199	0.50	-3.6
1,323,005	-		CCNA_01199	0.50	-2.5
1,323,024	+		CCNA_01199	0.53	-2.6
1,323,032	-		CCNA_01199	0.53	-2.3
1,323,069	-		CCNA_01199	0.58	+0.4
1,323,177	+		CCNA_01199	0.70	-0.8
1,323,185	-		CCNA_01199	0.71	-1.1
1,323,212	+		CCNA_01199	0.74	-2.6
1,323,245	+		CCNA_01199	0.78	-3.8
1,323,385	+				-2.0
1,323,393	-				-2.5
1,323,443	-				+0.8
1,323,445	-				-1.0
1,323,515	-				+2.2