Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00180

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00178 and CCNA_00179 overlap by 4 nucleotidesCCNA_00179 and CCNA_00180 overlap by 19 nucleotidesCCNA_00180 and CCNA_00181 overlap by 4 nucleotidesCCNA_00181 and CCNA_00182 overlap by 4 nucleotides CCNA_00178: CCNA_00178 - type II secretion pathway protein J, at 192,305 to 192,895 _00178 CCNA_00179: CCNA_00179 - type II secretion pathway protein K, at 192,892 to 193,866 _00179 CCNA_00180: CCNA_00180 - type II secretion pathway protein L, at 193,848 to 194,954 _00180 CCNA_00181: CCNA_00181 - type II secretion pathway protein M, at 194,951 to 195,427 _00181 CCNA_00182: CCNA_00182 - type II secretion pathway protein N, at 195,424 to 196,140 _00182 Position (kb) 193 194 195Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 192.876 kb on + strandat 192.876 kb on + strandat 192.876 kb on - strandat 192.878 kb on - strandat 192.884 kb on - strandat 192.884 kb on - strandat 192.884 kb on - strandat 192.886 kb on + strandat 192.912 kb on - strandat 192.919 kb on + strandat 192.942 kb on - strandat 193.022 kb on + strand, within CCNA_00179at 193.041 kb on - strand, within CCNA_00179at 193.046 kb on - strand, within CCNA_00179at 193.052 kb on + strand, within CCNA_00179at 193.055 kb on - strand, within CCNA_00179at 193.112 kb on - strand, within CCNA_00179at 193.112 kb on - strand, within CCNA_00179at 193.113 kb on - strand, within CCNA_00179at 193.117 kb on - strand, within CCNA_00179at 193.123 kb on - strand, within CCNA_00179at 193.123 kb on - strand, within CCNA_00179at 193.164 kb on + strand, within CCNA_00179at 193.177 kb on - strand, within CCNA_00179at 193.183 kb on - strand, within CCNA_00179at 193.184 kb on - strand, within CCNA_00179at 193.191 kb on - strand, within CCNA_00179at 193.202 kb on + strand, within CCNA_00179at 193.215 kb on - strand, within CCNA_00179at 193.265 kb on + strand, within CCNA_00179at 193.275 kb on + strand, within CCNA_00179at 193.283 kb on - strand, within CCNA_00179at 193.290 kb on - strand, within CCNA_00179at 193.313 kb on + strand, within CCNA_00179at 193.321 kb on - strand, within CCNA_00179at 193.350 kb on + strand, within CCNA_00179at 193.352 kb on + strand, within CCNA_00179at 193.402 kb on + strand, within CCNA_00179at 193.404 kb on - strand, within CCNA_00179at 193.410 kb on - strand, within CCNA_00179at 193.448 kb on - strand, within CCNA_00179at 193.466 kb on + strand, within CCNA_00179at 193.477 kb on + strand, within CCNA_00179at 193.479 kb on + strand, within CCNA_00179at 193.487 kb on - strand, within CCNA_00179at 193.487 kb on - strand, within CCNA_00179at 193.487 kb on - strand, within CCNA_00179at 193.530 kb on - strand, within CCNA_00179at 193.538 kb on - strand, within CCNA_00179at 193.542 kb on + strand, within CCNA_00179at 193.578 kb on - strand, within CCNA_00179at 193.590 kb on - strand, within CCNA_00179at 193.604 kb on + strand, within CCNA_00179at 193.650 kb on - strand, within CCNA_00179at 193.660 kb on + strand, within CCNA_00179at 193.676 kb on - strand, within CCNA_00179at 193.695 kb on - strand, within CCNA_00179at 193.772 kb on - strandat 193.788 kb on + strandat 193.788 kb on + strandat 193.796 kb on - strandat 193.845 kb on + strandat 193.853 kb on - strandat 193.866 kb on + strandat 193.867 kb on - strandat 193.878 kb on + strandat 193.878 kb on + strandat 193.920 kb on + strandat 193.925 kb on + strandat 193.927 kb on + strandat 193.927 kb on + strandat 193.927 kb on + strandat 193.927 kb on - strandat 193.933 kb on - strandat 193.933 kb on - strandat 193.933 kb on - strandat 193.935 kb on - strandat 193.947 kb on - strandat 193.955 kb on - strandat 193.982 kb on + strand, within CCNA_00180at 193.990 kb on + strand, within CCNA_00180at 193.994 kb on + strand, within CCNA_00180at 194.032 kb on + strand, within CCNA_00180at 194.040 kb on - strand, within CCNA_00180at 194.053 kb on + strand, within CCNA_00180at 194.058 kb on + strand, within CCNA_00180at 194.066 kb on - strand, within CCNA_00180at 194.066 kb on - strand, within CCNA_00180at 194.098 kb on + strand, within CCNA_00180at 194.118 kb on + strand, within CCNA_00180at 194.161 kb on + strand, within CCNA_00180at 194.163 kb on - strand, within CCNA_00180at 194.168 kb on + strand, within CCNA_00180at 194.168 kb on + strand, within CCNA_00180at 194.168 kb on + strand, within CCNA_00180at 194.176 kb on - strand, within CCNA_00180at 194.178 kb on + strand, within CCNA_00180at 194.186 kb on - strand, within CCNA_00180at 194.190 kb on + strand, within CCNA_00180at 194.198 kb on - strand, within CCNA_00180at 194.198 kb on - strand, within CCNA_00180at 194.198 kb on - strand, within CCNA_00180at 194.211 kb on + strand, within CCNA_00180at 194.211 kb on + strand, within CCNA_00180at 194.211 kb on + strand, within CCNA_00180at 194.211 kb on + strand, within CCNA_00180at 194.219 kb on - strand, within CCNA_00180at 194.219 kb on - strand, within CCNA_00180at 194.219 kb on - strand, within CCNA_00180at 194.219 kb on - strand, within CCNA_00180at 194.219 kb on - strand, within CCNA_00180at 194.269 kb on + strand, within CCNA_00180at 194.277 kb on - strand, within CCNA_00180at 194.283 kb on + strand, within CCNA_00180at 194.335 kb on - strand, within CCNA_00180at 194.335 kb on - strand, within CCNA_00180at 194.390 kb on + strand, within CCNA_00180at 194.399 kb on + strand, within CCNA_00180at 194.403 kb on + strand, within CCNA_00180at 194.456 kb on - strand, within CCNA_00180at 194.510 kb on - strand, within CCNA_00180at 194.540 kb on + strand, within CCNA_00180at 194.546 kb on - strand, within CCNA_00180at 194.548 kb on - strand, within CCNA_00180at 194.638 kb on - strand, within CCNA_00180at 194.640 kb on - strand, within CCNA_00180at 194.671 kb on + strand, within CCNA_00180at 194.671 kb on + strand, within CCNA_00180at 194.677 kb on - strand, within CCNA_00180at 194.679 kb on - strand, within CCNA_00180at 194.719 kb on - strand, within CCNA_00180at 194.752 kb on + strand, within CCNA_00180at 194.758 kb on + strand, within CCNA_00180at 194.777 kb on - strand, within CCNA_00180at 194.779 kb on + strand, within CCNA_00180at 194.779 kb on + strand, within CCNA_00180at 194.779 kb on + strand, within CCNA_00180at 194.787 kb on - strand, within CCNA_00180at 194.787 kb on - strand, within CCNA_00180at 194.787 kb on - strand, within CCNA_00180at 194.847 kb on + strandat 194.869 kb on + strandat 194.875 kb on + strandat 194.883 kb on - strandat 194.907 kb on - strandat 194.918 kb on + strandat 194.948 kb on + strandat 194.949 kb on - strandat 194.956 kb on - strandat 194.962 kb on + strandat 194.962 kb on + strandat 194.962 kb on + strandat 194.962 kb on + strandat 195.048 kb on - strand, within CCNA_00181at 195.057 kb on + strand, within CCNA_00181at 195.088 kb on + strand, within CCNA_00181at 195.111 kb on - strand, within CCNA_00181at 195.111 kb on - strand, within CCNA_00181at 195.111 kb on - strand, within CCNA_00181at 195.130 kb on + strand, within CCNA_00181at 195.138 kb on - strand, within CCNA_00181at 195.210 kb on - strand, within CCNA_00181at 195.273 kb on - strand, within CCNA_00181at 195.310 kb on + strand, within CCNA_00181at 195.310 kb on + strand, within CCNA_00181at 195.310 kb on + strand, within CCNA_00181at 195.310 kb on + strand, within CCNA_00181at 195.313 kb on - strand, within CCNA_00181at 195.318 kb on - strand, within CCNA_00181at 195.331 kb on - strand, within CCNA_00181at 195.358 kb on - strand, within CCNA_00181at 195.388 kb on + strandat 195.396 kb on - strandat 195.396 kb on - strandat 195.408 kb on - strandat 195.442 kb on - strandat 195.464 kb on + strandat 195.468 kb on + strandat 195.475 kb on + strandat 195.524 kb on + strand, within CCNA_00182at 195.524 kb on + strand, within CCNA_00182at 195.529 kb on - strand, within CCNA_00182at 195.530 kb on - strand, within CCNA_00182at 195.547 kb on - strand, within CCNA_00182at 195.549 kb on - strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.558 kb on + strand, within CCNA_00182at 195.566 kb on - strand, within CCNA_00182at 195.566 kb on - strand, within CCNA_00182at 195.566 kb on - strand, within CCNA_00182at 195.566 kb on - strand, within CCNA_00182at 195.573 kb on + strand, within CCNA_00182at 195.573 kb on + strand, within CCNA_00182at 195.573 kb on + strand, within CCNA_00182at 195.581 kb on - strand, within CCNA_00182at 195.631 kb on - strand, within CCNA_00182at 195.636 kb on + strand, within CCNA_00182at 195.640 kb on - strand, within CCNA_00182at 195.654 kb on + strand, within CCNA_00182at 195.672 kb on - strand, within CCNA_00182at 195.683 kb on - strand, within CCNA_00182at 195.696 kb on + strand, within CCNA_00182at 195.711 kb on - strand, within CCNA_00182at 195.757 kb on + strand, within CCNA_00182at 195.757 kb on + strand, within CCNA_00182at 195.757 kb on + strand, within CCNA_00182at 195.758 kb on + strand, within CCNA_00182at 195.758 kb on + strand, within CCNA_00182at 195.758 kb on + strand, within CCNA_00182at 195.758 kb on + strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.765 kb on - strand, within CCNA_00182at 195.825 kb on + strand, within CCNA_00182at 195.825 kb on + strand, within CCNA_00182at 195.882 kb on + strand, within CCNA_00182at 195.892 kb on + strand, within CCNA_00182at 195.892 kb on + strand, within CCNA_00182at 195.914 kb on - strand, within CCNA_00182at 195.916 kb on + strand, within CCNA_00182at 195.937 kb on - strand, within CCNA_00182

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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192,876 + -2.9
192,876 + +0.6
192,876 - +0.8
192,878 - -1.3
192,884 - +3.1
192,884 - -1.8
192,884 - -1.9
192,886 + +1.3
192,912 - +1.1
192,919 + +1.3
192,942 - +0.5
193,022 + CCNA_00179 0.13 -1.9
193,041 - CCNA_00179 0.15 -2.3
193,046 - CCNA_00179 0.16 +0.7
193,052 + CCNA_00179 0.16 -1.6
193,055 - CCNA_00179 0.17 -1.8
193,112 - CCNA_00179 0.23 -1.8
193,112 - CCNA_00179 0.23 -3.8
193,113 - CCNA_00179 0.23 +2.0
193,117 - CCNA_00179 0.23 +1.8
193,123 - CCNA_00179 0.24 -1.8
193,123 - CCNA_00179 0.24 -0.2
193,164 + CCNA_00179 0.28 -0.3
193,177 - CCNA_00179 0.29 +0.2
193,183 - CCNA_00179 0.30 +0.5
193,184 - CCNA_00179 0.30 +0.8
193,191 - CCNA_00179 0.31 -0.5
193,202 + CCNA_00179 0.32 +2.0
193,215 - CCNA_00179 0.33 +1.6
193,265 + CCNA_00179 0.38 -1.5
193,275 + CCNA_00179 0.39 -1.4
193,283 - CCNA_00179 0.40 -0.2
193,290 - CCNA_00179 0.41 -1.0
193,313 + CCNA_00179 0.43 +0.7
193,321 - CCNA_00179 0.44 +0.6
193,350 + CCNA_00179 0.47 -3.6
193,352 + CCNA_00179 0.47 -1.3
193,402 + CCNA_00179 0.52 +0.7
193,404 - CCNA_00179 0.53 +0.1
193,410 - CCNA_00179 0.53 -2.1
193,448 - CCNA_00179 0.57 -0.5
193,466 + CCNA_00179 0.59 +2.6
193,477 + CCNA_00179 0.60 +2.2
193,479 + CCNA_00179 0.60 +0.9
193,487 - CCNA_00179 0.61 -2.2
193,487 - CCNA_00179 0.61 -0.0
193,487 - CCNA_00179 0.61 -2.4
193,530 - CCNA_00179 0.65 -0.5
193,538 - CCNA_00179 0.66 -0.5
193,542 + CCNA_00179 0.67 -1.5
193,578 - CCNA_00179 0.70 +0.7
193,590 - CCNA_00179 0.72 -0.7
193,604 + CCNA_00179 0.73 -1.1
193,650 - CCNA_00179 0.78 +0.5
193,660 + CCNA_00179 0.79 +1.4
193,676 - CCNA_00179 0.80 +1.6
193,695 - CCNA_00179 0.82 +1.5
193,772 - -2.8
193,788 + -2.9
193,788 + +1.6
193,796 - +0.2
193,845 + +0.9
193,853 - +1.1
193,866 + -0.0
193,867 - -1.5
193,878 + -2.0
193,878 + +0.5
193,920 + +2.4
193,925 + -1.0
193,927 + -0.8
193,927 + +1.0
193,927 + -2.8
193,927 - +1.3
193,933 - +2.3
193,933 - -1.6
193,933 - +0.4
193,935 - +0.5
193,947 - -1.3
193,955 - -1.1
193,982 + CCNA_00180 0.12 -0.2
193,990 + CCNA_00180 0.13 +0.6
193,994 + CCNA_00180 0.13 -2.4
194,032 + CCNA_00180 0.17 -2.5
194,040 - CCNA_00180 0.17 +1.2
194,053 + CCNA_00180 0.19 +0.3
194,058 + CCNA_00180 0.19 -1.3
194,066 - CCNA_00180 0.20 -1.6
194,066 - CCNA_00180 0.20 -0.2
194,098 + CCNA_00180 0.23 +0.2
194,118 + CCNA_00180 0.24 +2.1
194,161 + CCNA_00180 0.28 +1.0
194,163 - CCNA_00180 0.28 -0.1
194,168 + CCNA_00180 0.29 +0.4
194,168 + CCNA_00180 0.29 +1.9
194,168 + CCNA_00180 0.29 -1.0
194,176 - CCNA_00180 0.30 +2.3
194,178 + CCNA_00180 0.30 -2.1
194,186 - CCNA_00180 0.31 +2.2
194,190 + CCNA_00180 0.31 +2.7
194,198 - CCNA_00180 0.32 -0.3
194,198 - CCNA_00180 0.32 -3.2
194,198 - CCNA_00180 0.32 +2.7
194,211 + CCNA_00180 0.33 +0.6
194,211 + CCNA_00180 0.33 -0.0
194,211 + CCNA_00180 0.33 +2.3
194,211 + CCNA_00180 0.33 +1.1
194,219 - CCNA_00180 0.34 +2.0
194,219 - CCNA_00180 0.34 +1.5
194,219 - CCNA_00180 0.34 -3.1
194,219 - CCNA_00180 0.34 +1.2
194,219 - CCNA_00180 0.34 -1.4
194,269 + CCNA_00180 0.38 -1.5
194,277 - CCNA_00180 0.39 +0.2
194,283 + CCNA_00180 0.39 -1.5
194,335 - CCNA_00180 0.44 -2.4
194,335 - CCNA_00180 0.44 -0.5
194,390 + CCNA_00180 0.49 -1.9
194,399 + CCNA_00180 0.50 -2.4
194,403 + CCNA_00180 0.50 +1.5
194,456 - CCNA_00180 0.55 +1.3
194,510 - CCNA_00180 0.60 +2.3
194,540 + CCNA_00180 0.63 +1.8
194,546 - CCNA_00180 0.63 +4.4
194,548 - CCNA_00180 0.63 -2.6
194,638 - CCNA_00180 0.71 +2.0
194,640 - CCNA_00180 0.72 +1.8
194,671 + CCNA_00180 0.74 +0.5
194,671 + CCNA_00180 0.74 -1.9
194,677 - CCNA_00180 0.75 +1.9
194,679 - CCNA_00180 0.75 -0.4
194,719 - CCNA_00180 0.79 +1.7
194,752 + CCNA_00180 0.82 -1.4
194,758 + CCNA_00180 0.82 -0.0
194,777 - CCNA_00180 0.84 -2.8
194,779 + CCNA_00180 0.84 +0.4
194,779 + CCNA_00180 0.84 +2.0
194,779 + CCNA_00180 0.84 +1.2
194,787 - CCNA_00180 0.85 +1.1
194,787 - CCNA_00180 0.85 -1.1
194,787 - CCNA_00180 0.85 +1.4
194,847 + -0.8
194,869 + -0.2
194,875 + -1.9
194,883 - +0.2
194,907 - +1.2
194,918 + -0.9
194,948 + -0.5
194,949 - +1.0
194,956 - -2.0
194,962 + -0.8
194,962 + -1.1
194,962 + +1.8
194,962 + -2.0
195,048 - CCNA_00181 0.20 +1.2
195,057 + CCNA_00181 0.22 -1.1
195,088 + CCNA_00181 0.29 -0.2
195,111 - CCNA_00181 0.34 +1.0
195,111 - CCNA_00181 0.34 -0.7
195,111 - CCNA_00181 0.34 +1.0
195,130 + CCNA_00181 0.38 +0.6
195,138 - CCNA_00181 0.39 -0.6
195,210 - CCNA_00181 0.54 +1.7
195,273 - CCNA_00181 0.68 +1.0
195,310 + CCNA_00181 0.75 +0.1
195,310 + CCNA_00181 0.75 +2.6
195,310 + CCNA_00181 0.75 +0.5
195,310 + CCNA_00181 0.75 +2.6
195,313 - CCNA_00181 0.76 +0.6
195,318 - CCNA_00181 0.77 +1.1
195,331 - CCNA_00181 0.80 +1.4
195,358 - CCNA_00181 0.85 +1.3
195,388 + +0.6
195,396 - +0.7
195,396 - +0.8
195,408 - +1.9
195,442 - +2.1
195,464 + -0.5
195,468 + +3.8
195,475 + +0.6
195,524 + CCNA_00182 0.14 -0.5
195,524 + CCNA_00182 0.14 +0.2
195,529 - CCNA_00182 0.15 -2.5
195,530 - CCNA_00182 0.15 +1.4
195,547 - CCNA_00182 0.17 -0.2
195,549 - CCNA_00182 0.17 +0.9
195,558 + CCNA_00182 0.19 -1.1
195,558 + CCNA_00182 0.19 +1.9
195,558 + CCNA_00182 0.19 -0.8
195,558 + CCNA_00182 0.19 -2.5
195,558 + CCNA_00182 0.19 +0.3
195,558 + CCNA_00182 0.19 +0.1
195,558 + CCNA_00182 0.19 +0.3
195,558 + CCNA_00182 0.19 -0.2
195,566 - CCNA_00182 0.20 -1.8
195,566 - CCNA_00182 0.20 -3.0
195,566 - CCNA_00182 0.20 +1.0
195,566 - CCNA_00182 0.20 +0.1
195,573 + CCNA_00182 0.21 -0.6
195,573 + CCNA_00182 0.21 -1.5
195,573 + CCNA_00182 0.21 +0.1
195,581 - CCNA_00182 0.22 +0.6
195,631 - CCNA_00182 0.29 -2.0
195,636 + CCNA_00182 0.30 -2.1
195,640 - CCNA_00182 0.30 +1.4
195,654 + CCNA_00182 0.32 +0.1
195,672 - CCNA_00182 0.35 -1.3
195,683 - CCNA_00182 0.36 -0.4
195,696 + CCNA_00182 0.38 +1.3
195,711 - CCNA_00182 0.40 +0.6
195,757 + CCNA_00182 0.46 -1.7
195,757 + CCNA_00182 0.46 +2.2
195,757 + CCNA_00182 0.46 +0.8
195,758 + CCNA_00182 0.47 +1.1
195,758 + CCNA_00182 0.47 +1.0
195,758 + CCNA_00182 0.47 -1.0
195,758 + CCNA_00182 0.47 -2.1
195,765 - CCNA_00182 0.48 -0.3
195,765 - CCNA_00182 0.48 +0.7
195,765 - CCNA_00182 0.48 -0.6
195,765 - CCNA_00182 0.48 -0.1
195,765 - CCNA_00182 0.48 +0.1
195,765 - CCNA_00182 0.48 +0.1
195,765 - CCNA_00182 0.48 -2.4
195,825 + CCNA_00182 0.56 -1.4
195,825 + CCNA_00182 0.56 +1.6
195,882 + CCNA_00182 0.64 +1.6
195,892 + CCNA_00182 0.65 +1.4
195,892 + CCNA_00182 0.65 -1.3
195,914 - CCNA_00182 0.68 -2.0
195,916 + CCNA_00182 0.69 +1.1
195,937 - CCNA_00182 0.72 -1.5

Or see this region's nucleotide sequence