Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_30085

Experiment: Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_30075 and AO356_30080 are separated by 11 nucleotidesAO356_30080 and AO356_30085 are separated by 72 nucleotidesAO356_30085 and AO356_30090 are separated by 281 nucleotides AO356_30075: AO356_30075 - protein glxC, at 7,019,797 to 7,020,480 _30075 AO356_30080: AO356_30080 - amidophosphoribosyltransferase, at 7,020,492 to 7,021,397 _30080 AO356_30085: AO356_30085 - glutamine synthetase, at 7,021,470 to 7,022,804 _30085 AO356_30090: AO356_30090 - XRE family transcriptional regulator, at 7,023,086 to 7,023,685 _30090 Position (kb) 7021 7022 7023Strain fitness (log2 ratio) -2 -1 0 1 2at 7020.472 kb on - strandat 7020.480 kb on + strandat 7020.481 kb on - strandat 7020.481 kb on - strandat 7020.493 kb on + strandat 7020.517 kb on + strandat 7020.517 kb on + strandat 7020.517 kb on + strandat 7020.517 kb on + strandat 7020.517 kb on + strandat 7020.518 kb on - strandat 7020.518 kb on - strandat 7020.518 kb on - strandat 7020.518 kb on - strandat 7020.521 kb on + strandat 7020.522 kb on - strandat 7020.607 kb on + strand, within AO356_30080at 7020.608 kb on - strand, within AO356_30080at 7021.273 kb on + strand, within AO356_30080at 7021.314 kb on - strandat 7021.383 kb on + strandat 7021.397 kb on + strandat 7021.397 kb on + strandat 7021.398 kb on - strandat 7021.398 kb on - strandat 7021.398 kb on - strandat 7021.398 kb on - strandat 7021.538 kb on + strandat 7021.539 kb on - strandat 7021.539 kb on - strandat 7021.688 kb on - strand, within AO356_30085at 7021.921 kb on + strand, within AO356_30085at 7021.922 kb on - strand, within AO356_30085at 7021.922 kb on - strand, within AO356_30085at 7021.993 kb on + strand, within AO356_30085at 7021.994 kb on - strand, within AO356_30085at 7022.215 kb on + strand, within AO356_30085at 7022.216 kb on - strand, within AO356_30085at 7022.221 kb on + strand, within AO356_30085at 7022.221 kb on + strand, within AO356_30085at 7022.221 kb on + strand, within AO356_30085at 7022.221 kb on + strand, within AO356_30085at 7022.221 kb on + strand, within AO356_30085at 7022.222 kb on - strand, within AO356_30085at 7022.222 kb on - strand, within AO356_30085at 7022.222 kb on - strand, within AO356_30085at 7022.222 kb on - strand, within AO356_30085at 7022.339 kb on + strand, within AO356_30085at 7022.339 kb on + strand, within AO356_30085at 7022.339 kb on + strand, within AO356_30085at 7022.341 kb on + strand, within AO356_30085at 7022.341 kb on + strand, within AO356_30085at 7022.342 kb on - strand, within AO356_30085at 7022.342 kb on - strand, within AO356_30085at 7022.347 kb on + strand, within AO356_30085at 7022.475 kb on + strand, within AO356_30085at 7022.476 kb on - strand, within AO356_30085at 7022.476 kb on - strand, within AO356_30085at 7022.476 kb on - strand, within AO356_30085at 7022.476 kb on - strand, within AO356_30085at 7022.476 kb on - strand, within AO356_30085at 7022.507 kb on - strand, within AO356_30085at 7022.751 kb on + strandat 7022.751 kb on + strandat 7022.752 kb on - strandat 7022.752 kb on - strandat 7022.755 kb on + strandat 7022.756 kb on - strandat 7022.756 kb on - strandat 7022.879 kb on + strandat 7022.959 kb on + strandat 7022.959 kb on + strandat 7022.959 kb on + strandat 7022.960 kb on - strandat 7022.960 kb on - strandat 7022.961 kb on + strandat 7022.961 kb on + strandat 7022.961 kb on + strandat 7022.962 kb on - strandat 7022.962 kb on - strandat 7022.963 kb on + strandat 7022.964 kb on - strandat 7023.085 kb on + strandat 7023.085 kb on + strandat 7023.085 kb on + strandat 7023.085 kb on + strandat 7023.085 kb on + strandat 7023.085 kb on + strandat 7023.085 kb on + strandat 7023.085 kb on + strandat 7023.086 kb on - strandat 7023.086 kb on - strandat 7023.086 kb on - strandat 7023.125 kb on + strandat 7023.126 kb on - strandat 7023.175 kb on - strand, within AO356_30090at 7023.397 kb on + strand, within AO356_30090at 7023.397 kb on + strand, within AO356_30090at 7023.397 kb on + strand, within AO356_30090at 7023.398 kb on - strand, within AO356_30090at 7023.398 kb on - strand, within AO356_30090at 7023.398 kb on - strand, within AO356_30090at 7023.401 kb on + strand, within AO356_30090at 7023.401 kb on + strand, within AO356_30090at 7023.401 kb on + strand, within AO356_30090at 7023.401 kb on + strand, within AO356_30090at 7023.402 kb on - strand, within AO356_30090at 7023.402 kb on - strand, within AO356_30090at 7023.402 kb on - strand, within AO356_30090at 7023.449 kb on + strand, within AO356_30090at 7023.449 kb on + strand, within AO356_30090at 7023.449 kb on + strand, within AO356_30090at 7023.449 kb on + strand, within AO356_30090at 7023.450 kb on - strand, within AO356_30090at 7023.450 kb on - strand, within AO356_30090at 7023.450 kb on - strand, within AO356_30090at 7023.542 kb on + strand, within AO356_30090at 7023.683 kb on + strandat 7023.684 kb on - strandat 7023.802 kb on - strandat 7023.803 kb on + strandat 7023.804 kb on - strandat 7023.804 kb on - strandat 7023.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM
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7,020,472 - +0.3
7,020,480 + +1.0
7,020,481 - +0.4
7,020,481 - +0.3
7,020,493 + -0.5
7,020,517 + -0.6
7,020,517 + -0.2
7,020,517 + -1.0
7,020,517 + +0.8
7,020,517 + +0.1
7,020,518 - +1.3
7,020,518 - -0.1
7,020,518 - +0.3
7,020,518 - -0.9
7,020,521 + -2.3
7,020,522 - -0.0
7,020,607 + AO356_30080 0.13 +0.1
7,020,608 - AO356_30080 0.13 +0.1
7,021,273 + AO356_30080 0.86 -0.8
7,021,314 - -1.1
7,021,383 + +0.1
7,021,397 + +0.7
7,021,397 + -0.6
7,021,398 - +0.8
7,021,398 - -1.2
7,021,398 - +0.8
7,021,398 - -0.3
7,021,538 + +0.4
7,021,539 - -1.2
7,021,539 - -1.0
7,021,688 - AO356_30085 0.16 -0.2
7,021,921 + AO356_30085 0.34 -0.5
7,021,922 - AO356_30085 0.34 +0.3
7,021,922 - AO356_30085 0.34 +0.5
7,021,993 + AO356_30085 0.39 -0.9
7,021,994 - AO356_30085 0.39 -0.5
7,022,215 + AO356_30085 0.56 -0.8
7,022,216 - AO356_30085 0.56 +0.3
7,022,221 + AO356_30085 0.56 -0.6
7,022,221 + AO356_30085 0.56 +0.0
7,022,221 + AO356_30085 0.56 -0.1
7,022,221 + AO356_30085 0.56 -0.6
7,022,221 + AO356_30085 0.56 -0.1
7,022,222 - AO356_30085 0.56 +0.8
7,022,222 - AO356_30085 0.56 +0.4
7,022,222 - AO356_30085 0.56 -1.1
7,022,222 - AO356_30085 0.56 +0.3
7,022,339 + AO356_30085 0.65 -0.7
7,022,339 + AO356_30085 0.65 -0.6
7,022,339 + AO356_30085 0.65 -0.2
7,022,341 + AO356_30085 0.65 -0.2
7,022,341 + AO356_30085 0.65 +1.1
7,022,342 - AO356_30085 0.65 +0.1
7,022,342 - AO356_30085 0.65 +1.0
7,022,347 + AO356_30085 0.66 -0.0
7,022,475 + AO356_30085 0.75 +0.0
7,022,476 - AO356_30085 0.75 -0.4
7,022,476 - AO356_30085 0.75 -0.6
7,022,476 - AO356_30085 0.75 +1.9
7,022,476 - AO356_30085 0.75 +0.7
7,022,476 - AO356_30085 0.75 -1.0
7,022,507 - AO356_30085 0.78 +1.4
7,022,751 + -0.5
7,022,751 + -2.5
7,022,752 - -0.5
7,022,752 - -1.1
7,022,755 + -0.1
7,022,756 - -0.8
7,022,756 - -0.6
7,022,879 + -0.4
7,022,959 + -0.2
7,022,959 + -0.2
7,022,959 + +0.1
7,022,960 - -1.4
7,022,960 - +0.2
7,022,961 + -1.0
7,022,961 + +1.0
7,022,961 + -0.7
7,022,962 - -0.1
7,022,962 - -0.2
7,022,963 + +0.3
7,022,964 - +1.0
7,023,085 + +0.4
7,023,085 + -0.4
7,023,085 + -0.2
7,023,085 + -0.0
7,023,085 + +0.5
7,023,085 + -1.8
7,023,085 + +0.5
7,023,085 + -0.5
7,023,086 - +0.5
7,023,086 - -1.3
7,023,086 - -0.4
7,023,125 + +0.8
7,023,126 - +0.2
7,023,175 - AO356_30090 0.15 -0.5
7,023,397 + AO356_30090 0.52 -0.5
7,023,397 + AO356_30090 0.52 -0.6
7,023,397 + AO356_30090 0.52 -1.2
7,023,398 - AO356_30090 0.52 -1.2
7,023,398 - AO356_30090 0.52 -0.4
7,023,398 - AO356_30090 0.52 +1.4
7,023,401 + AO356_30090 0.53 -0.8
7,023,401 + AO356_30090 0.53 -1.0
7,023,401 + AO356_30090 0.53 -0.1
7,023,401 + AO356_30090 0.53 -2.6
7,023,402 - AO356_30090 0.53 +1.4
7,023,402 - AO356_30090 0.53 +0.6
7,023,402 - AO356_30090 0.53 -0.4
7,023,449 + AO356_30090 0.60 +0.2
7,023,449 + AO356_30090 0.60 +0.5
7,023,449 + AO356_30090 0.60 +0.1
7,023,449 + AO356_30090 0.60 -0.4
7,023,450 - AO356_30090 0.61 -0.2
7,023,450 - AO356_30090 0.61 -0.0
7,023,450 - AO356_30090 0.61 +0.2
7,023,542 + AO356_30090 0.76 -2.7
7,023,683 + +0.4
7,023,684 - -0.4
7,023,802 - +0.0
7,023,803 + +0.1
7,023,804 - -0.9
7,023,804 - -0.3
7,023,804 - +0.2

Or see this region's nucleotide sequence