Experiment: Nickel (II) chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30075 and AO356_30080 are separated by 11 nucleotides AO356_30080 and AO356_30085 are separated by 72 nucleotides AO356_30085 and AO356_30090 are separated by 281 nucleotides
AO356_30075: AO356_30075 - protein glxC, at 7,019,797 to 7,020,480
_30075
AO356_30080: AO356_30080 - amidophosphoribosyltransferase, at 7,020,492 to 7,021,397
_30080
AO356_30085: AO356_30085 - glutamine synthetase, at 7,021,470 to 7,022,804
_30085
AO356_30090: AO356_30090 - XRE family transcriptional regulator, at 7,023,086 to 7,023,685
_30090
Position (kb)
7021
7022
7023 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 7020.472 kb on - strand at 7020.480 kb on + strand at 7020.481 kb on - strand at 7020.481 kb on - strand at 7020.493 kb on + strand at 7020.517 kb on + strand at 7020.517 kb on + strand at 7020.517 kb on + strand at 7020.517 kb on + strand at 7020.517 kb on + strand at 7020.518 kb on - strand at 7020.518 kb on - strand at 7020.518 kb on - strand at 7020.518 kb on - strand at 7020.521 kb on + strand at 7020.522 kb on - strand at 7020.607 kb on + strand, within AO356_30080 at 7020.608 kb on - strand, within AO356_30080 at 7021.273 kb on + strand, within AO356_30080 at 7021.314 kb on - strand at 7021.383 kb on + strand at 7021.397 kb on + strand at 7021.397 kb on + strand at 7021.398 kb on - strand at 7021.398 kb on - strand at 7021.398 kb on - strand at 7021.398 kb on - strand at 7021.538 kb on + strand at 7021.539 kb on - strand at 7021.539 kb on - strand at 7021.688 kb on - strand, within AO356_30085 at 7021.921 kb on + strand, within AO356_30085 at 7021.922 kb on - strand, within AO356_30085 at 7021.922 kb on - strand, within AO356_30085 at 7021.993 kb on + strand, within AO356_30085 at 7021.994 kb on - strand, within AO356_30085 at 7022.215 kb on + strand, within AO356_30085 at 7022.216 kb on - strand, within AO356_30085 at 7022.221 kb on + strand, within AO356_30085 at 7022.221 kb on + strand, within AO356_30085 at 7022.221 kb on + strand, within AO356_30085 at 7022.221 kb on + strand, within AO356_30085 at 7022.221 kb on + strand, within AO356_30085 at 7022.222 kb on - strand, within AO356_30085 at 7022.222 kb on - strand, within AO356_30085 at 7022.222 kb on - strand, within AO356_30085 at 7022.222 kb on - strand, within AO356_30085 at 7022.339 kb on + strand, within AO356_30085 at 7022.339 kb on + strand, within AO356_30085 at 7022.339 kb on + strand, within AO356_30085 at 7022.341 kb on + strand, within AO356_30085 at 7022.341 kb on + strand, within AO356_30085 at 7022.342 kb on - strand, within AO356_30085 at 7022.342 kb on - strand, within AO356_30085 at 7022.347 kb on + strand, within AO356_30085 at 7022.475 kb on + strand, within AO356_30085 at 7022.476 kb on - strand, within AO356_30085 at 7022.476 kb on - strand, within AO356_30085 at 7022.476 kb on - strand, within AO356_30085 at 7022.476 kb on - strand, within AO356_30085 at 7022.476 kb on - strand, within AO356_30085 at 7022.507 kb on - strand, within AO356_30085 at 7022.751 kb on + strand at 7022.751 kb on + strand at 7022.752 kb on - strand at 7022.752 kb on - strand at 7022.755 kb on + strand at 7022.756 kb on - strand at 7022.756 kb on - strand at 7022.879 kb on + strand at 7022.959 kb on + strand at 7022.959 kb on + strand at 7022.959 kb on + strand at 7022.960 kb on - strand at 7022.960 kb on - strand at 7022.961 kb on + strand at 7022.961 kb on + strand at 7022.961 kb on + strand at 7022.962 kb on - strand at 7022.962 kb on - strand at 7022.963 kb on + strand at 7022.964 kb on - strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.086 kb on - strand at 7023.086 kb on - strand at 7023.086 kb on - strand at 7023.125 kb on + strand at 7023.126 kb on - strand at 7023.175 kb on - strand, within AO356_30090 at 7023.397 kb on + strand, within AO356_30090 at 7023.397 kb on + strand, within AO356_30090 at 7023.397 kb on + strand, within AO356_30090 at 7023.398 kb on - strand, within AO356_30090 at 7023.398 kb on - strand, within AO356_30090 at 7023.398 kb on - strand, within AO356_30090 at 7023.401 kb on + strand, within AO356_30090 at 7023.401 kb on + strand, within AO356_30090 at 7023.401 kb on + strand, within AO356_30090 at 7023.401 kb on + strand, within AO356_30090 at 7023.402 kb on - strand, within AO356_30090 at 7023.402 kb on - strand, within AO356_30090 at 7023.402 kb on - strand, within AO356_30090 at 7023.449 kb on + strand, within AO356_30090 at 7023.449 kb on + strand, within AO356_30090 at 7023.449 kb on + strand, within AO356_30090 at 7023.449 kb on + strand, within AO356_30090 at 7023.450 kb on - strand, within AO356_30090 at 7023.450 kb on - strand, within AO356_30090 at 7023.450 kb on - strand, within AO356_30090 at 7023.542 kb on + strand, within AO356_30090 at 7023.683 kb on + strand at 7023.684 kb on - strand at 7023.802 kb on - strand at 7023.803 kb on + strand at 7023.804 kb on - strand at 7023.804 kb on - strand at 7023.804 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM remove 7,020,472 - +0.3 7,020,480 + +1.0 7,020,481 - +0.4 7,020,481 - +0.3 7,020,493 + -0.5 7,020,517 + -0.6 7,020,517 + -0.2 7,020,517 + -1.0 7,020,517 + +0.8 7,020,517 + +0.1 7,020,518 - +1.3 7,020,518 - -0.1 7,020,518 - +0.3 7,020,518 - -0.9 7,020,521 + -2.3 7,020,522 - -0.0 7,020,607 + AO356_30080 0.13 +0.1 7,020,608 - AO356_30080 0.13 +0.1 7,021,273 + AO356_30080 0.86 -0.8 7,021,314 - -1.1 7,021,383 + +0.1 7,021,397 + +0.7 7,021,397 + -0.6 7,021,398 - +0.8 7,021,398 - -1.2 7,021,398 - +0.8 7,021,398 - -0.3 7,021,538 + +0.4 7,021,539 - -1.2 7,021,539 - -1.0 7,021,688 - AO356_30085 0.16 -0.2 7,021,921 + AO356_30085 0.34 -0.5 7,021,922 - AO356_30085 0.34 +0.3 7,021,922 - AO356_30085 0.34 +0.5 7,021,993 + AO356_30085 0.39 -0.9 7,021,994 - AO356_30085 0.39 -0.5 7,022,215 + AO356_30085 0.56 -0.8 7,022,216 - AO356_30085 0.56 +0.3 7,022,221 + AO356_30085 0.56 -0.6 7,022,221 + AO356_30085 0.56 +0.0 7,022,221 + AO356_30085 0.56 -0.1 7,022,221 + AO356_30085 0.56 -0.6 7,022,221 + AO356_30085 0.56 -0.1 7,022,222 - AO356_30085 0.56 +0.8 7,022,222 - AO356_30085 0.56 +0.4 7,022,222 - AO356_30085 0.56 -1.1 7,022,222 - AO356_30085 0.56 +0.3 7,022,339 + AO356_30085 0.65 -0.7 7,022,339 + AO356_30085 0.65 -0.6 7,022,339 + AO356_30085 0.65 -0.2 7,022,341 + AO356_30085 0.65 -0.2 7,022,341 + AO356_30085 0.65 +1.1 7,022,342 - AO356_30085 0.65 +0.1 7,022,342 - AO356_30085 0.65 +1.0 7,022,347 + AO356_30085 0.66 -0.0 7,022,475 + AO356_30085 0.75 +0.0 7,022,476 - AO356_30085 0.75 -0.4 7,022,476 - AO356_30085 0.75 -0.6 7,022,476 - AO356_30085 0.75 +1.9 7,022,476 - AO356_30085 0.75 +0.7 7,022,476 - AO356_30085 0.75 -1.0 7,022,507 - AO356_30085 0.78 +1.4 7,022,751 + -0.5 7,022,751 + -2.5 7,022,752 - -0.5 7,022,752 - -1.1 7,022,755 + -0.1 7,022,756 - -0.8 7,022,756 - -0.6 7,022,879 + -0.4 7,022,959 + -0.2 7,022,959 + -0.2 7,022,959 + +0.1 7,022,960 - -1.4 7,022,960 - +0.2 7,022,961 + -1.0 7,022,961 + +1.0 7,022,961 + -0.7 7,022,962 - -0.1 7,022,962 - -0.2 7,022,963 + +0.3 7,022,964 - +1.0 7,023,085 + +0.4 7,023,085 + -0.4 7,023,085 + -0.2 7,023,085 + -0.0 7,023,085 + +0.5 7,023,085 + -1.8 7,023,085 + +0.5 7,023,085 + -0.5 7,023,086 - +0.5 7,023,086 - -1.3 7,023,086 - -0.4 7,023,125 + +0.8 7,023,126 - +0.2 7,023,175 - AO356_30090 0.15 -0.5 7,023,397 + AO356_30090 0.52 -0.5 7,023,397 + AO356_30090 0.52 -0.6 7,023,397 + AO356_30090 0.52 -1.2 7,023,398 - AO356_30090 0.52 -1.2 7,023,398 - AO356_30090 0.52 -0.4 7,023,398 - AO356_30090 0.52 +1.4 7,023,401 + AO356_30090 0.53 -0.8 7,023,401 + AO356_30090 0.53 -1.0 7,023,401 + AO356_30090 0.53 -0.1 7,023,401 + AO356_30090 0.53 -2.6 7,023,402 - AO356_30090 0.53 +1.4 7,023,402 - AO356_30090 0.53 +0.6 7,023,402 - AO356_30090 0.53 -0.4 7,023,449 + AO356_30090 0.60 +0.2 7,023,449 + AO356_30090 0.60 +0.5 7,023,449 + AO356_30090 0.60 +0.1 7,023,449 + AO356_30090 0.60 -0.4 7,023,450 - AO356_30090 0.61 -0.2 7,023,450 - AO356_30090 0.61 -0.0 7,023,450 - AO356_30090 0.61 +0.2 7,023,542 + AO356_30090 0.76 -2.7 7,023,683 + +0.4 7,023,684 - -0.4 7,023,802 - +0.0 7,023,803 + +0.1 7,023,804 - -0.9 7,023,804 - -0.3 7,023,804 - +0.2
Or see this region's nucleotide sequence