Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29115

Experiment: Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29105 and AO356_29110 overlap by 4 nucleotidesAO356_29110 and AO356_29115 are separated by 63 nucleotidesAO356_29115 and AO356_29120 overlap by 1 nucleotides AO356_29105: AO356_29105 - fumarylacetoacetate hydrolase, at 6,766,501 to 6,767,493 _29105 AO356_29110: AO356_29110 - cupin, at 6,767,490 to 6,768,062 _29110 AO356_29115: AO356_29115 - Vanillate O-demethylase oxidoreductase, at 6,768,126 to 6,769,079 _29115 AO356_29120: AO356_29120 - vanillate monooxygenase, at 6,769,079 to 6,770,122 _29120 Position (kb) 6768 6769 6770Strain fitness (log2 ratio) -1 0 1at 6767.167 kb on - strand, within AO356_29105at 6767.167 kb on - strand, within AO356_29105at 6767.167 kb on - strand, within AO356_29105at 6768.427 kb on + strand, within AO356_29115at 6768.427 kb on + strand, within AO356_29115at 6768.671 kb on - strand, within AO356_29115at 6768.764 kb on - strand, within AO356_29115at 6768.932 kb on - strand, within AO356_29115at 6769.174 kb on + strandat 6769.175 kb on - strandat 6769.513 kb on - strand, within AO356_29120at 6769.680 kb on + strand, within AO356_29120at 6769.702 kb on - strand, within AO356_29120at 6769.716 kb on + strand, within AO356_29120at 6769.852 kb on + strand, within AO356_29120

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM
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6,767,167 - AO356_29105 0.67 -0.5
6,767,167 - AO356_29105 0.67 -0.4
6,767,167 - AO356_29105 0.67 -0.3
6,768,427 + AO356_29115 0.32 +0.7
6,768,427 + AO356_29115 0.32 -0.9
6,768,671 - AO356_29115 0.57 +0.4
6,768,764 - AO356_29115 0.67 -0.2
6,768,932 - AO356_29115 0.84 -0.0
6,769,174 + +1.0
6,769,175 - +0.3
6,769,513 - AO356_29120 0.42 +1.0
6,769,680 + AO356_29120 0.58 +0.3
6,769,702 - AO356_29120 0.60 +0.7
6,769,716 + AO356_29120 0.61 +0.0
6,769,852 + AO356_29120 0.74 -0.1

Or see this region's nucleotide sequence