Experiment: Nickel (II) chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28070 and AO356_28075 are separated by 2 nucleotides AO356_28075 and AO356_28080 are separated by 156 nucleotides AO356_28080 and AO356_28085 are separated by 27 nucleotides
AO356_28070: AO356_28070 - histidine kinase, at 6,409,810 to 6,411,063
_28070
AO356_28075: AO356_28075 - hypothetical protein, at 6,411,066 to 6,411,284
_28075
AO356_28080: AO356_28080 - branched-chain amino acid ABC transporter substrate-binding protein, at 6,411,441 to 6,412,607
_28080
AO356_28085: AO356_28085 - hypothetical protein, at 6,412,635 to 6,413,624
_28085
Position (kb)
6411
6412
6413 Strain fitness (log2 ratio)
-2
-1
0
1 at 6410.658 kb on - strand, within AO356_28070 at 6410.658 kb on - strand, within AO356_28070 at 6410.777 kb on - strand, within AO356_28070 at 6410.924 kb on + strand, within AO356_28070 at 6410.924 kb on + strand, within AO356_28070 at 6411.324 kb on + strand at 6411.324 kb on + strand at 6411.325 kb on - strand at 6411.325 kb on - strand at 6411.325 kb on - strand at 6411.350 kb on - strand at 6411.353 kb on - strand at 6411.385 kb on + strand at 6411.385 kb on + strand at 6411.386 kb on - strand at 6411.410 kb on + strand at 6411.410 kb on + strand at 6411.459 kb on + strand at 6411.460 kb on - strand at 6411.460 kb on - strand at 6411.988 kb on - strand, within AO356_28080 at 6412.120 kb on - strand, within AO356_28080 at 6412.165 kb on - strand, within AO356_28080 at 6412.251 kb on + strand, within AO356_28080 at 6412.452 kb on + strand, within AO356_28080 at 6412.474 kb on + strand, within AO356_28080 at 6412.474 kb on + strand, within AO356_28080 at 6412.573 kb on - strand at 6412.801 kb on + strand, within AO356_28085 at 6412.857 kb on + strand, within AO356_28085 at 6412.857 kb on + strand, within AO356_28085 at 6412.857 kb on + strand, within AO356_28085 at 6412.858 kb on - strand, within AO356_28085 at 6412.858 kb on - strand, within AO356_28085 at 6412.858 kb on - strand, within AO356_28085 at 6412.858 kb on - strand, within AO356_28085 at 6412.928 kb on - strand, within AO356_28085 at 6412.983 kb on + strand, within AO356_28085 at 6412.983 kb on + strand, within AO356_28085 at 6412.983 kb on + strand, within AO356_28085 at 6412.983 kb on + strand, within AO356_28085 at 6412.984 kb on - strand, within AO356_28085 at 6412.984 kb on - strand, within AO356_28085
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM remove 6,410,658 - AO356_28070 0.68 -1.9 6,410,658 - AO356_28070 0.68 -0.8 6,410,777 - AO356_28070 0.77 +0.5 6,410,924 + AO356_28070 0.89 -0.7 6,410,924 + AO356_28070 0.89 -0.1 6,411,324 + -1.4 6,411,324 + -0.2 6,411,325 - -1.2 6,411,325 - -1.2 6,411,325 - +0.2 6,411,350 - -1.4 6,411,353 - -0.7 6,411,385 + +0.4 6,411,385 + -0.7 6,411,386 - +0.4 6,411,410 + +0.7 6,411,410 + -0.4 6,411,459 + -0.1 6,411,460 - +0.7 6,411,460 - +0.6 6,411,988 - AO356_28080 0.47 +0.0 6,412,120 - AO356_28080 0.58 +0.1 6,412,165 - AO356_28080 0.62 +0.8 6,412,251 + AO356_28080 0.69 +0.4 6,412,452 + AO356_28080 0.87 +0.3 6,412,474 + AO356_28080 0.89 +1.1 6,412,474 + AO356_28080 0.89 -0.4 6,412,573 - -0.5 6,412,801 + AO356_28085 0.17 +0.5 6,412,857 + AO356_28085 0.22 -0.8 6,412,857 + AO356_28085 0.22 +0.6 6,412,857 + AO356_28085 0.22 +0.8 6,412,858 - AO356_28085 0.23 +0.6 6,412,858 - AO356_28085 0.23 -0.2 6,412,858 - AO356_28085 0.23 -0.7 6,412,858 - AO356_28085 0.23 -0.4 6,412,928 - AO356_28085 0.30 +1.0 6,412,983 + AO356_28085 0.35 +0.0 6,412,983 + AO356_28085 0.35 +0.6 6,412,983 + AO356_28085 0.35 +0.1 6,412,983 + AO356_28085 0.35 +0.5 6,412,984 - AO356_28085 0.35 -0.2 6,412,984 - AO356_28085 0.35 +1.4
Or see this region's nucleotide sequence