Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27485

Experiment: Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27480 and AO356_27485 are separated by 45 nucleotidesAO356_27485 and AO356_27490 are separated by 173 nucleotides AO356_27480: AO356_27480 - hypothetical protein, at 6,263,235 to 6,264,242 _27480 AO356_27485: AO356_27485 - hypothetical protein, at 6,264,288 to 6,265,094 _27485 AO356_27490: AO356_27490 - xylose isomerase, at 6,265,268 to 6,266,077 _27490 Position (kb) 6264 6265 6266Strain fitness (log2 ratio) -3 -2 -1 0 1at 6263.460 kb on + strand, within AO356_27480at 6263.460 kb on + strand, within AO356_27480at 6263.460 kb on + strand, within AO356_27480at 6263.460 kb on + strand, within AO356_27480at 6263.460 kb on + strand, within AO356_27480at 6263.460 kb on + strand, within AO356_27480at 6263.460 kb on + strand, within AO356_27480at 6263.461 kb on - strand, within AO356_27480at 6263.461 kb on - strand, within AO356_27480at 6263.461 kb on - strand, within AO356_27480at 6263.461 kb on - strand, within AO356_27480at 6263.525 kb on + strand, within AO356_27480at 6263.614 kb on + strand, within AO356_27480at 6263.615 kb on - strand, within AO356_27480at 6263.704 kb on - strand, within AO356_27480at 6263.759 kb on + strand, within AO356_27480at 6263.759 kb on + strand, within AO356_27480at 6263.760 kb on - strand, within AO356_27480at 6263.818 kb on + strand, within AO356_27480at 6263.819 kb on - strand, within AO356_27480at 6263.997 kb on + strand, within AO356_27480at 6263.997 kb on + strand, within AO356_27480at 6263.998 kb on - strand, within AO356_27480at 6264.084 kb on + strand, within AO356_27480at 6264.085 kb on - strand, within AO356_27480at 6264.088 kb on - strand, within AO356_27480at 6264.135 kb on + strand, within AO356_27480at 6264.135 kb on + strand, within AO356_27480at 6264.135 kb on + strand, within AO356_27480at 6264.135 kb on + strand, within AO356_27480at 6264.192 kb on + strandat 6264.407 kb on - strand, within AO356_27485at 6264.432 kb on + strand, within AO356_27485at 6264.432 kb on + strand, within AO356_27485at 6264.433 kb on - strand, within AO356_27485at 6264.904 kb on + strand, within AO356_27485at 6265.102 kb on + strandat 6265.103 kb on - strandat 6265.103 kb on - strandat 6265.168 kb on + strandat 6265.168 kb on + strandat 6265.179 kb on + strandat 6265.179 kb on + strandat 6265.228 kb on - strandat 6265.324 kb on - strandat 6265.415 kb on + strand, within AO356_27490at 6265.416 kb on - strand, within AO356_27490at 6265.494 kb on + strand, within AO356_27490at 6265.495 kb on - strand, within AO356_27490at 6265.530 kb on + strand, within AO356_27490at 6265.530 kb on + strand, within AO356_27490at 6265.531 kb on - strand, within AO356_27490at 6265.552 kb on - strand, within AO356_27490at 6265.583 kb on - strand, within AO356_27490at 6265.586 kb on + strand, within AO356_27490at 6265.586 kb on + strand, within AO356_27490at 6265.586 kb on + strand, within AO356_27490at 6265.586 kb on + strand, within AO356_27490at 6265.586 kb on + strand, within AO356_27490at 6265.586 kb on + strand, within AO356_27490at 6265.586 kb on + strand, within AO356_27490at 6265.587 kb on - strand, within AO356_27490at 6265.587 kb on - strand, within AO356_27490at 6265.587 kb on - strand, within AO356_27490at 6265.587 kb on - strand, within AO356_27490at 6265.587 kb on - strand, within AO356_27490at 6265.587 kb on - strand, within AO356_27490at 6265.587 kb on - strand, within AO356_27490at 6265.647 kb on - strand, within AO356_27490at 6265.653 kb on - strand, within AO356_27490at 6265.698 kb on + strand, within AO356_27490at 6265.698 kb on + strand, within AO356_27490at 6265.698 kb on + strand, within AO356_27490at 6265.699 kb on - strand, within AO356_27490at 6265.711 kb on - strand, within AO356_27490at 6265.905 kb on + strand, within AO356_27490at 6265.905 kb on + strand, within AO356_27490at 6266.078 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM
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6,263,460 + AO356_27480 0.22 +1.1
6,263,460 + AO356_27480 0.22 -0.4
6,263,460 + AO356_27480 0.22 -0.1
6,263,460 + AO356_27480 0.22 +0.4
6,263,460 + AO356_27480 0.22 -0.6
6,263,460 + AO356_27480 0.22 +0.4
6,263,460 + AO356_27480 0.22 -0.4
6,263,461 - AO356_27480 0.22 +1.2
6,263,461 - AO356_27480 0.22 +0.7
6,263,461 - AO356_27480 0.22 +0.2
6,263,461 - AO356_27480 0.22 +0.7
6,263,525 + AO356_27480 0.29 +1.5
6,263,614 + AO356_27480 0.38 -1.5
6,263,615 - AO356_27480 0.38 -1.1
6,263,704 - AO356_27480 0.47 -0.9
6,263,759 + AO356_27480 0.52 +1.4
6,263,759 + AO356_27480 0.52 -0.0
6,263,760 - AO356_27480 0.52 +1.4
6,263,818 + AO356_27480 0.58 -0.3
6,263,819 - AO356_27480 0.58 -0.3
6,263,997 + AO356_27480 0.76 -0.0
6,263,997 + AO356_27480 0.76 +0.8
6,263,998 - AO356_27480 0.76 -0.6
6,264,084 + AO356_27480 0.84 +0.1
6,264,085 - AO356_27480 0.84 +1.4
6,264,088 - AO356_27480 0.85 +1.4
6,264,135 + AO356_27480 0.89 +0.2
6,264,135 + AO356_27480 0.89 -1.5
6,264,135 + AO356_27480 0.89 -1.3
6,264,135 + AO356_27480 0.89 +0.2
6,264,192 + +0.6
6,264,407 - AO356_27485 0.15 -1.1
6,264,432 + AO356_27485 0.18 +0.8
6,264,432 + AO356_27485 0.18 -0.0
6,264,433 - AO356_27485 0.18 -0.7
6,264,904 + AO356_27485 0.76 -1.0
6,265,102 + -0.0
6,265,103 - -0.6
6,265,103 - +0.5
6,265,168 + -0.2
6,265,168 + -1.2
6,265,179 + +0.3
6,265,179 + +0.2
6,265,228 - -2.9
6,265,324 - -0.2
6,265,415 + AO356_27490 0.18 +0.6
6,265,416 - AO356_27490 0.18 +0.6
6,265,494 + AO356_27490 0.28 -0.0
6,265,495 - AO356_27490 0.28 -0.0
6,265,530 + AO356_27490 0.32 -0.5
6,265,530 + AO356_27490 0.32 -0.4
6,265,531 - AO356_27490 0.32 -1.1
6,265,552 - AO356_27490 0.35 -0.0
6,265,583 - AO356_27490 0.39 -0.6
6,265,586 + AO356_27490 0.39 +0.1
6,265,586 + AO356_27490 0.39 +0.5
6,265,586 + AO356_27490 0.39 -0.3
6,265,586 + AO356_27490 0.39 +0.0
6,265,586 + AO356_27490 0.39 -0.0
6,265,586 + AO356_27490 0.39 -1.2
6,265,586 + AO356_27490 0.39 +0.2
6,265,587 - AO356_27490 0.39 -0.4
6,265,587 - AO356_27490 0.39 -0.3
6,265,587 - AO356_27490 0.39 -0.0
6,265,587 - AO356_27490 0.39 +0.5
6,265,587 - AO356_27490 0.39 +0.9
6,265,587 - AO356_27490 0.39 -0.8
6,265,587 - AO356_27490 0.39 +0.1
6,265,647 - AO356_27490 0.47 +0.0
6,265,653 - AO356_27490 0.48 +0.1
6,265,698 + AO356_27490 0.53 -1.1
6,265,698 + AO356_27490 0.53 +0.1
6,265,698 + AO356_27490 0.53 +1.4
6,265,699 - AO356_27490 0.53 -0.5
6,265,711 - AO356_27490 0.55 -1.1
6,265,905 + AO356_27490 0.79 -0.5
6,265,905 + AO356_27490 0.79 +0.0
6,266,078 - -1.7

Or see this region's nucleotide sequence