Experiment: Nickel (II) chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_18305 and AO356_18310 are separated by 222 nucleotides AO356_18310 and AO356_18315 overlap by 4 nucleotides AO356_18315 and AO356_18320 are separated by 192 nucleotides
AO356_18305: AO356_18305 - alkyl hydroperoxide reductase, at 4,124,529 to 4,125,131
_18305
AO356_18310: AO356_18310 - ribonuclease T, at 4,125,354 to 4,126,031
_18310
AO356_18315: AO356_18315 - dihydroorotase, at 4,126,028 to 4,127,074
_18315
AO356_18320: AO356_18320 - hypothetical protein, at 4,127,267 to 4,128,256
_18320
Position (kb) 4126
4127
4128 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4125.102 kb on + strand at 4125.103 kb on - strand at 4125.129 kb on + strand at 4125.129 kb on + strand at 4125.129 kb on + strand at 4125.130 kb on - strand at 4125.130 kb on - strand at 4125.233 kb on - strand at 4125.233 kb on - strand at 4125.233 kb on - strand at 4125.233 kb on - strand at 4125.233 kb on - strand at 4125.355 kb on + strand at 4125.356 kb on - strand at 4125.356 kb on - strand at 4125.356 kb on - strand at 4125.356 kb on - strand at 4127.076 kb on - strand at 4127.161 kb on + strand at 4127.161 kb on + strand at 4127.162 kb on - strand at 4127.162 kb on - strand at 4127.174 kb on + strand at 4127.174 kb on + strand at 4127.175 kb on - strand at 4127.175 kb on - strand at 4127.175 kb on - strand at 4127.244 kb on + strand at 4127.244 kb on + strand at 4127.245 kb on - strand at 4127.245 kb on - strand at 4127.245 kb on - strand at 4127.245 kb on - strand at 4127.246 kb on + strand at 4127.246 kb on + strand at 4127.247 kb on - strand at 4127.247 kb on - strand at 4127.247 kb on - strand at 4127.279 kb on + strand at 4127.283 kb on + strand at 4127.283 kb on + strand at 4127.283 kb on + strand at 4127.284 kb on - strand at 4127.284 kb on - strand at 4127.284 kb on - strand at 4127.471 kb on + strand, within AO356_18320 at 4127.471 kb on + strand, within AO356_18320 at 4127.471 kb on + strand, within AO356_18320 at 4127.471 kb on + strand, within AO356_18320 at 4127.471 kb on + strand, within AO356_18320 at 4127.471 kb on + strand, within AO356_18320 at 4127.471 kb on + strand, within AO356_18320 at 4127.471 kb on + strand, within AO356_18320 at 4127.471 kb on + strand, within AO356_18320 at 4127.472 kb on - strand, within AO356_18320 at 4127.472 kb on - strand, within AO356_18320 at 4127.472 kb on - strand, within AO356_18320 at 4127.472 kb on - strand, within AO356_18320 at 4127.583 kb on + strand, within AO356_18320 at 4127.583 kb on + strand, within AO356_18320 at 4127.583 kb on + strand, within AO356_18320 at 4127.583 kb on + strand, within AO356_18320 at 4127.583 kb on + strand, within AO356_18320 at 4127.583 kb on + strand, within AO356_18320 at 4127.583 kb on + strand, within AO356_18320 at 4127.583 kb on + strand, within AO356_18320 at 4127.584 kb on - strand, within AO356_18320 at 4127.584 kb on - strand, within AO356_18320 at 4127.584 kb on - strand, within AO356_18320 at 4127.584 kb on - strand, within AO356_18320 at 4127.584 kb on - strand, within AO356_18320 at 4127.584 kb on - strand, within AO356_18320 at 4127.584 kb on - strand, within AO356_18320 at 4127.584 kb on - strand, within AO356_18320 at 4127.662 kb on + strand, within AO356_18320 at 4127.663 kb on - strand, within AO356_18320 at 4127.717 kb on - strand, within AO356_18320 at 4127.733 kb on - strand, within AO356_18320 at 4128.013 kb on + strand, within AO356_18320
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM remove 4,125,102 + +0.7 4,125,103 - +1.0 4,125,129 + -0.0 4,125,129 + -1.1 4,125,129 + +1.0 4,125,130 - +0.6 4,125,130 - +0.2 4,125,233 - -1.1 4,125,233 - -0.4 4,125,233 - -0.9 4,125,233 - +0.4 4,125,233 - +1.3 4,125,355 + +1.2 4,125,356 - -0.4 4,125,356 - -0.0 4,125,356 - +0.4 4,125,356 - +0.4 4,127,076 - -0.5 4,127,161 + -0.3 4,127,161 + -2.1 4,127,162 - -0.2 4,127,162 - +1.0 4,127,174 + +0.3 4,127,174 + +0.0 4,127,175 - -0.7 4,127,175 - -1.0 4,127,175 - +0.3 4,127,244 + +0.6 4,127,244 + +2.4 4,127,245 - -1.3 4,127,245 - +0.5 4,127,245 - -0.4 4,127,245 - +0.6 4,127,246 + +0.6 4,127,246 + +0.8 4,127,247 - -0.3 4,127,247 - +0.2 4,127,247 - -0.7 4,127,279 + -0.0 4,127,283 + +1.3 4,127,283 + -1.0 4,127,283 + -0.1 4,127,284 - -0.2 4,127,284 - -0.6 4,127,284 - +1.4 4,127,471 + AO356_18320 0.21 -0.8 4,127,471 + AO356_18320 0.21 +0.2 4,127,471 + AO356_18320 0.21 -0.4 4,127,471 + AO356_18320 0.21 +0.1 4,127,471 + AO356_18320 0.21 -0.3 4,127,471 + AO356_18320 0.21 +0.4 4,127,471 + AO356_18320 0.21 -0.4 4,127,471 + AO356_18320 0.21 -0.0 4,127,471 + AO356_18320 0.21 -1.3 4,127,472 - AO356_18320 0.21 -0.3 4,127,472 - AO356_18320 0.21 -0.0 4,127,472 - AO356_18320 0.21 +0.8 4,127,472 - AO356_18320 0.21 +0.7 4,127,583 + AO356_18320 0.32 -0.8 4,127,583 + AO356_18320 0.32 +1.0 4,127,583 + AO356_18320 0.32 -0.6 4,127,583 + AO356_18320 0.32 +1.6 4,127,583 + AO356_18320 0.32 -0.4 4,127,583 + AO356_18320 0.32 -1.1 4,127,583 + AO356_18320 0.32 -0.2 4,127,583 + AO356_18320 0.32 +0.2 4,127,584 - AO356_18320 0.32 -0.0 4,127,584 - AO356_18320 0.32 -0.6 4,127,584 - AO356_18320 0.32 -0.1 4,127,584 - AO356_18320 0.32 -0.2 4,127,584 - AO356_18320 0.32 +0.7 4,127,584 - AO356_18320 0.32 +0.0 4,127,584 - AO356_18320 0.32 -1.4 4,127,584 - AO356_18320 0.32 +0.1 4,127,662 + AO356_18320 0.40 +0.1 4,127,663 - AO356_18320 0.40 -0.1 4,127,717 - AO356_18320 0.45 -0.6 4,127,733 - AO356_18320 0.47 -0.8 4,128,013 + AO356_18320 0.75 +0.2
Or see this region's nucleotide sequence