Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14270

Experiment: Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14265 and AO356_14270 are separated by 67 nucleotidesAO356_14270 and AO356_14275 are separated by 478 nucleotidesAO356_14275 and AO356_14280 are separated by 199 nucleotides AO356_14265: AO356_14265 - RNA polymerase subunit sigma-70, at 3,243,589 to 3,245,436 _14265 AO356_14270: AO356_14270 - DNA primase, at 3,245,504 to 3,247,462 _14270 AO356_14275: AO356_14275 - 30S ribosomal protein S21, at 3,247,941 to 3,248,156 _14275 AO356_14280: AO356_14280 - tRNA threonylcarbamoyl adenosine modification protein TsaD, at 3,248,356 to 3,249,381 _14280 Position (kb) 3245 3246 3247 3248Strain fitness (log2 ratio) -2 -1 0 1at 3245.489 kb on - strandat 3247.490 kb on - strandat 3247.588 kb on - strandat 3247.588 kb on - strandat 3247.588 kb on - strandat 3247.588 kb on - strandat 3247.588 kb on - strandat 3247.588 kb on - strandat 3247.588 kb on - strandat 3247.615 kb on - strandat 3247.615 kb on - strandat 3247.615 kb on - strandat 3247.615 kb on - strandat 3247.615 kb on - strandat 3247.615 kb on - strandat 3247.615 kb on - strandat 3247.619 kb on - strandat 3247.619 kb on - strandat 3247.619 kb on - strandat 3247.625 kb on - strandat 3247.682 kb on - strandat 3247.872 kb on - strandat 3247.872 kb on - strandat 3247.888 kb on - strandat 3248.312 kb on + strandat 3248.360 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM
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3,245,489 - -1.1
3,247,490 - -0.3
3,247,588 - -0.8
3,247,588 - -1.4
3,247,588 - -0.2
3,247,588 - +0.1
3,247,588 - -1.5
3,247,588 - -0.7
3,247,588 - -0.9
3,247,615 - -0.2
3,247,615 - -0.2
3,247,615 - -0.0
3,247,615 - +0.1
3,247,615 - -0.6
3,247,615 - -0.8
3,247,615 - -0.2
3,247,619 - -0.0
3,247,619 - -1.5
3,247,619 - -0.8
3,247,625 - +0.3
3,247,682 - -1.7
3,247,872 - +0.0
3,247,872 - -2.0
3,247,888 - -0.5
3,248,312 + -1.0
3,248,360 + +0.0

Or see this region's nucleotide sequence