Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09235

Experiment: Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09230 and AO356_09235 are separated by 804 nucleotidesAO356_09235 and AO356_09240 are separated by 251 nucleotides AO356_09230: AO356_09230 - excinuclease, at 2,085,581 to 2,086,027 _09230 AO356_09235: AO356_09235 - hypothetical protein, at 2,086,832 to 2,087,365 _09235 AO356_09240: AO356_09240 - hydroxyproline-2-epimerase, at 2,087,617 to 2,088,615 _09240 Position (kb) 2086 2087 2088Strain fitness (log2 ratio) -2 -1 0 1 2at 2085.926 kb on + strand, within AO356_09230at 2085.926 kb on + strand, within AO356_09230at 2085.926 kb on + strand, within AO356_09230at 2085.927 kb on - strand, within AO356_09230at 2085.959 kb on + strand, within AO356_09230at 2085.959 kb on + strand, within AO356_09230at 2085.959 kb on + strand, within AO356_09230at 2085.960 kb on - strand, within AO356_09230at 2085.960 kb on - strand, within AO356_09230at 2085.960 kb on - strand, within AO356_09230at 2086.047 kb on + strandat 2086.048 kb on - strandat 2086.408 kb on + strandat 2086.455 kb on + strandat 2086.523 kb on + strandat 2086.656 kb on + strandat 2086.721 kb on + strandat 2086.721 kb on + strandat 2086.961 kb on - strand, within AO356_09235at 2086.961 kb on - strand, within AO356_09235at 2087.015 kb on - strand, within AO356_09235at 2087.015 kb on - strand, within AO356_09235at 2087.015 kb on - strand, within AO356_09235at 2087.015 kb on - strand, within AO356_09235at 2087.015 kb on - strand, within AO356_09235at 2087.064 kb on + strand, within AO356_09235at 2087.064 kb on + strand, within AO356_09235at 2087.064 kb on + strand, within AO356_09235at 2087.065 kb on - strand, within AO356_09235at 2087.065 kb on - strand, within AO356_09235at 2087.065 kb on - strand, within AO356_09235at 2087.065 kb on - strand, within AO356_09235at 2087.065 kb on - strand, within AO356_09235at 2087.065 kb on - strand, within AO356_09235at 2087.194 kb on - strand, within AO356_09235at 2087.197 kb on + strand, within AO356_09235at 2087.292 kb on + strand, within AO356_09235at 2087.292 kb on + strand, within AO356_09235at 2087.292 kb on + strand, within AO356_09235at 2087.292 kb on + strand, within AO356_09235at 2087.293 kb on - strand, within AO356_09235at 2087.340 kb on + strandat 2087.341 kb on - strandat 2087.341 kb on - strandat 2087.379 kb on - strandat 2087.450 kb on + strandat 2087.451 kb on - strandat 2087.451 kb on - strandat 2087.451 kb on - strandat 2087.494 kb on - strandat 2087.494 kb on - strandat 2087.506 kb on + strandat 2087.522 kb on + strandat 2087.557 kb on - strandat 2087.557 kb on - strandat 2087.571 kb on + strandat 2087.572 kb on - strandat 2087.572 kb on - strandat 2087.618 kb on + strandat 2087.675 kb on + strandat 2087.676 kb on - strandat 2087.676 kb on - strandat 2087.713 kb on + strandat 2087.714 kb on - strandat 2087.738 kb on - strand, within AO356_09240at 2087.762 kb on + strand, within AO356_09240at 2087.762 kb on + strand, within AO356_09240at 2087.763 kb on - strand, within AO356_09240at 2087.792 kb on + strand, within AO356_09240at 2087.793 kb on - strand, within AO356_09240at 2087.891 kb on + strand, within AO356_09240at 2087.892 kb on - strand, within AO356_09240at 2087.892 kb on - strand, within AO356_09240at 2087.994 kb on + strand, within AO356_09240at 2087.994 kb on + strand, within AO356_09240at 2088.182 kb on + strand, within AO356_09240at 2088.183 kb on - strand, within AO356_09240at 2088.219 kb on - strand, within AO356_09240at 2088.219 kb on - strand, within AO356_09240at 2088.236 kb on + strand, within AO356_09240

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM
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2,085,926 + AO356_09230 0.77 -0.1
2,085,926 + AO356_09230 0.77 +0.8
2,085,926 + AO356_09230 0.77 -0.3
2,085,927 - AO356_09230 0.77 +0.1
2,085,959 + AO356_09230 0.85 -0.6
2,085,959 + AO356_09230 0.85 +0.4
2,085,959 + AO356_09230 0.85 +1.0
2,085,960 - AO356_09230 0.85 +0.5
2,085,960 - AO356_09230 0.85 -0.3
2,085,960 - AO356_09230 0.85 +0.8
2,086,047 + -0.3
2,086,048 - -1.5
2,086,408 + +0.0
2,086,455 + +1.3
2,086,523 + -0.2
2,086,656 + -0.2
2,086,721 + -2.2
2,086,721 + -0.4
2,086,961 - AO356_09235 0.24 -0.6
2,086,961 - AO356_09235 0.24 +0.3
2,087,015 - AO356_09235 0.34 -1.0
2,087,015 - AO356_09235 0.34 +0.2
2,087,015 - AO356_09235 0.34 -0.9
2,087,015 - AO356_09235 0.34 +1.0
2,087,015 - AO356_09235 0.34 -0.8
2,087,064 + AO356_09235 0.43 -1.4
2,087,064 + AO356_09235 0.43 +0.6
2,087,064 + AO356_09235 0.43 -0.2
2,087,065 - AO356_09235 0.44 -0.1
2,087,065 - AO356_09235 0.44 -0.5
2,087,065 - AO356_09235 0.44 +0.2
2,087,065 - AO356_09235 0.44 -0.2
2,087,065 - AO356_09235 0.44 +1.6
2,087,065 - AO356_09235 0.44 +1.3
2,087,194 - AO356_09235 0.68 -0.5
2,087,197 + AO356_09235 0.68 +0.0
2,087,292 + AO356_09235 0.86 +0.1
2,087,292 + AO356_09235 0.86 +1.0
2,087,292 + AO356_09235 0.86 -0.4
2,087,292 + AO356_09235 0.86 -1.4
2,087,293 - AO356_09235 0.86 -1.5
2,087,340 + -0.4
2,087,341 - -1.4
2,087,341 - +0.4
2,087,379 - +0.1
2,087,450 + +1.8
2,087,451 - +0.0
2,087,451 - +0.3
2,087,451 - -1.4
2,087,494 - +1.1
2,087,494 - -0.9
2,087,506 + -0.4
2,087,522 + -0.2
2,087,557 - -1.8
2,087,557 - -0.1
2,087,571 + +0.1
2,087,572 - +0.9
2,087,572 - -0.5
2,087,618 + +0.9
2,087,675 + -0.2
2,087,676 - -0.9
2,087,676 - +0.7
2,087,713 + +1.1
2,087,714 - -0.0
2,087,738 - AO356_09240 0.12 -0.7
2,087,762 + AO356_09240 0.15 -1.5
2,087,762 + AO356_09240 0.15 +0.2
2,087,763 - AO356_09240 0.15 +0.7
2,087,792 + AO356_09240 0.18 -0.5
2,087,793 - AO356_09240 0.18 -0.3
2,087,891 + AO356_09240 0.27 +0.7
2,087,892 - AO356_09240 0.28 -1.0
2,087,892 - AO356_09240 0.28 +0.0
2,087,994 + AO356_09240 0.38 +0.5
2,087,994 + AO356_09240 0.38 -0.5
2,088,182 + AO356_09240 0.57 -0.1
2,088,183 - AO356_09240 0.57 +0.6
2,088,219 - AO356_09240 0.60 -0.2
2,088,219 - AO356_09240 0.60 -0.1
2,088,236 + AO356_09240 0.62 +0.3

Or see this region's nucleotide sequence