Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04915

Experiment: Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04910 and AO356_04915 are separated by 45 nucleotidesAO356_04915 and AO356_04920 are separated by 331 nucleotidesAO356_04920 and AO356_04925 are separated by 1 nucleotides AO356_04910: AO356_04910 - 3-carboxy-cis,cis-muconate cycloisomerase, at 1,104,779 to 1,106,143 _04910 AO356_04915: AO356_04915 - alpha-ketoglutarate permease, at 1,106,189 to 1,107,487 _04915 AO356_04920: AO356_04920 - protocatechuate 3,4-dioxygenase, at 1,107,819 to 1,108,385 _04920 AO356_04925: AO356_04925 - protocatechuate 3,4-dioxygenase, at 1,108,387 to 1,109,091 _04925 Position (kb) 1106 1107 1108Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1105.238 kb on + strand, within AO356_04910at 1105.705 kb on - strand, within AO356_04910at 1105.836 kb on + strand, within AO356_04910at 1105.836 kb on + strand, within AO356_04910at 1105.837 kb on - strand, within AO356_04910at 1105.837 kb on - strand, within AO356_04910at 1105.906 kb on + strand, within AO356_04910at 1105.948 kb on - strand, within AO356_04910at 1106.106 kb on + strandat 1106.107 kb on - strandat 1106.208 kb on + strandat 1106.208 kb on + strandat 1106.208 kb on + strandat 1106.208 kb on + strandat 1106.271 kb on + strandat 1106.271 kb on + strandat 1106.271 kb on + strandat 1106.271 kb on + strandat 1106.272 kb on - strandat 1106.272 kb on - strandat 1106.278 kb on - strandat 1106.322 kb on + strand, within AO356_04915at 1106.322 kb on + strand, within AO356_04915at 1106.323 kb on - strand, within AO356_04915at 1106.323 kb on - strand, within AO356_04915at 1106.361 kb on + strand, within AO356_04915at 1106.361 kb on + strand, within AO356_04915at 1106.362 kb on - strand, within AO356_04915at 1106.436 kb on + strand, within AO356_04915at 1106.437 kb on - strand, within AO356_04915at 1106.437 kb on - strand, within AO356_04915at 1106.437 kb on - strand, within AO356_04915at 1106.437 kb on - strand, within AO356_04915at 1106.473 kb on + strand, within AO356_04915at 1106.473 kb on + strand, within AO356_04915at 1106.611 kb on + strand, within AO356_04915at 1106.611 kb on + strand, within AO356_04915at 1106.611 kb on + strand, within AO356_04915at 1106.611 kb on + strand, within AO356_04915at 1106.611 kb on + strand, within AO356_04915at 1106.611 kb on + strand, within AO356_04915at 1106.611 kb on + strand, within AO356_04915at 1106.611 kb on + strand, within AO356_04915at 1106.611 kb on + strand, within AO356_04915at 1106.612 kb on - strand, within AO356_04915at 1106.612 kb on - strand, within AO356_04915at 1106.612 kb on - strand, within AO356_04915at 1106.612 kb on - strand, within AO356_04915at 1106.617 kb on + strand, within AO356_04915at 1106.617 kb on + strand, within AO356_04915at 1106.617 kb on + strand, within AO356_04915at 1106.617 kb on + strand, within AO356_04915at 1106.617 kb on + strand, within AO356_04915at 1106.617 kb on + strand, within AO356_04915at 1106.617 kb on + strand, within AO356_04915at 1106.617 kb on + strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.618 kb on - strand, within AO356_04915at 1106.619 kb on + strand, within AO356_04915at 1106.619 kb on + strand, within AO356_04915at 1106.619 kb on + strand, within AO356_04915at 1106.619 kb on + strand, within AO356_04915at 1106.619 kb on + strand, within AO356_04915at 1106.619 kb on + strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.620 kb on - strand, within AO356_04915at 1106.646 kb on + strand, within AO356_04915at 1106.646 kb on + strand, within AO356_04915at 1106.646 kb on + strand, within AO356_04915at 1106.647 kb on - strand, within AO356_04915at 1106.647 kb on - strand, within AO356_04915at 1106.647 kb on - strand, within AO356_04915at 1106.647 kb on - strand, within AO356_04915at 1106.688 kb on + strand, within AO356_04915at 1106.688 kb on + strand, within AO356_04915at 1106.689 kb on - strand, within AO356_04915at 1106.689 kb on - strand, within AO356_04915at 1106.700 kb on + strand, within AO356_04915at 1106.700 kb on + strand, within AO356_04915at 1106.700 kb on + strand, within AO356_04915at 1106.700 kb on + strand, within AO356_04915at 1106.700 kb on + strand, within AO356_04915at 1106.700 kb on + strand, within AO356_04915at 1106.701 kb on - strand, within AO356_04915at 1106.701 kb on - strand, within AO356_04915at 1106.701 kb on - strand, within AO356_04915at 1106.701 kb on - strand, within AO356_04915at 1106.701 kb on - strand, within AO356_04915at 1106.713 kb on + strand, within AO356_04915at 1106.714 kb on - strand, within AO356_04915at 1106.715 kb on + strand, within AO356_04915at 1106.715 kb on + strand, within AO356_04915at 1106.861 kb on + strand, within AO356_04915at 1106.861 kb on + strand, within AO356_04915at 1107.000 kb on + strand, within AO356_04915at 1107.054 kb on + strand, within AO356_04915at 1107.054 kb on + strand, within AO356_04915at 1107.054 kb on + strand, within AO356_04915at 1107.054 kb on + strand, within AO356_04915at 1107.054 kb on + strand, within AO356_04915at 1107.054 kb on + strand, within AO356_04915at 1107.055 kb on - strand, within AO356_04915at 1107.055 kb on - strand, within AO356_04915at 1107.055 kb on - strand, within AO356_04915at 1107.055 kb on - strand, within AO356_04915at 1107.150 kb on + strand, within AO356_04915at 1107.150 kb on + strand, within AO356_04915at 1107.150 kb on + strand, within AO356_04915at 1107.150 kb on + strand, within AO356_04915at 1107.150 kb on + strand, within AO356_04915at 1107.150 kb on + strand, within AO356_04915at 1107.150 kb on + strand, within AO356_04915at 1107.151 kb on - strand, within AO356_04915at 1107.151 kb on - strand, within AO356_04915at 1107.151 kb on - strand, within AO356_04915at 1107.151 kb on - strand, within AO356_04915at 1107.151 kb on - strand, within AO356_04915at 1107.358 kb on - strandat 1107.375 kb on + strandat 1107.381 kb on + strandat 1107.381 kb on + strandat 1107.381 kb on + strandat 1107.382 kb on - strandat 1107.382 kb on - strandat 1107.462 kb on + strandat 1107.462 kb on + strandat 1107.462 kb on + strandat 1107.463 kb on - strandat 1107.463 kb on - strandat 1107.492 kb on + strandat 1107.492 kb on + strandat 1107.492 kb on + strandat 1107.493 kb on - strandat 1107.493 kb on - strandat 1107.577 kb on - strandat 1107.646 kb on + strandat 1107.646 kb on + strandat 1107.647 kb on - strandat 1107.647 kb on - strandat 1107.647 kb on - strandat 1107.647 kb on - strandat 1107.647 kb on - strandat 1107.667 kb on + strandat 1107.736 kb on - strandat 1107.823 kb on + strandat 1107.877 kb on + strand, within AO356_04920at 1107.878 kb on - strand, within AO356_04920at 1107.878 kb on - strand, within AO356_04920at 1107.979 kb on + strand, within AO356_04920at 1107.980 kb on - strand, within AO356_04920at 1107.980 kb on - strand, within AO356_04920at 1108.116 kb on + strand, within AO356_04920at 1108.117 kb on - strand, within AO356_04920at 1108.186 kb on + strand, within AO356_04920at 1108.186 kb on + strand, within AO356_04920at 1108.186 kb on + strand, within AO356_04920at 1108.187 kb on - strand, within AO356_04920at 1108.342 kb on + strandat 1108.342 kb on + strandat 1108.342 kb on + strandat 1108.342 kb on + strandat 1108.343 kb on - strandat 1108.343 kb on - strandat 1108.343 kb on - strandat 1108.343 kb on - strandat 1108.388 kb on + strandat 1108.388 kb on + strandat 1108.388 kb on + strandat 1108.388 kb on + strandat 1108.388 kb on + strandat 1108.388 kb on + strandat 1108.389 kb on - strandat 1108.389 kb on - strandat 1108.389 kb on - strandat 1108.389 kb on - strandat 1108.389 kb on - strandat 1108.389 kb on - strandat 1108.389 kb on - strandat 1108.451 kb on + strandat 1108.451 kb on + strandat 1108.455 kb on + strandat 1108.456 kb on - strandat 1108.456 kb on - strandat 1108.456 kb on - strandat 1108.456 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM
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1,105,238 + AO356_04910 0.34 -0.5
1,105,705 - AO356_04910 0.68 -0.1
1,105,836 + AO356_04910 0.77 -1.2
1,105,836 + AO356_04910 0.77 -1.0
1,105,837 - AO356_04910 0.78 -0.8
1,105,837 - AO356_04910 0.78 -0.1
1,105,906 + AO356_04910 0.83 -0.1
1,105,948 - AO356_04910 0.86 -0.9
1,106,106 + +0.0
1,106,107 - +0.8
1,106,208 + +0.0
1,106,208 + +1.0
1,106,208 + -0.6
1,106,208 + +1.0
1,106,271 + -0.0
1,106,271 + -0.8
1,106,271 + -1.1
1,106,271 + -1.0
1,106,272 - -0.0
1,106,272 - -1.7
1,106,278 - -2.2
1,106,322 + AO356_04915 0.10 +0.3
1,106,322 + AO356_04915 0.10 -1.3
1,106,323 - AO356_04915 0.10 +0.5
1,106,323 - AO356_04915 0.10 +0.4
1,106,361 + AO356_04915 0.13 -0.0
1,106,361 + AO356_04915 0.13 -0.6
1,106,362 - AO356_04915 0.13 +0.6
1,106,436 + AO356_04915 0.19 -0.1
1,106,437 - AO356_04915 0.19 -2.0
1,106,437 - AO356_04915 0.19 -0.5
1,106,437 - AO356_04915 0.19 -0.9
1,106,437 - AO356_04915 0.19 +0.5
1,106,473 + AO356_04915 0.22 +0.5
1,106,473 + AO356_04915 0.22 -0.6
1,106,611 + AO356_04915 0.32 -0.5
1,106,611 + AO356_04915 0.32 +0.6
1,106,611 + AO356_04915 0.32 +0.0
1,106,611 + AO356_04915 0.32 +0.7
1,106,611 + AO356_04915 0.32 +1.0
1,106,611 + AO356_04915 0.32 +0.7
1,106,611 + AO356_04915 0.32 +0.5
1,106,611 + AO356_04915 0.32 -0.5
1,106,611 + AO356_04915 0.32 +0.5
1,106,612 - AO356_04915 0.33 +0.3
1,106,612 - AO356_04915 0.33 -1.5
1,106,612 - AO356_04915 0.33 -0.8
1,106,612 - AO356_04915 0.33 -0.3
1,106,617 + AO356_04915 0.33 -0.5
1,106,617 + AO356_04915 0.33 -0.3
1,106,617 + AO356_04915 0.33 +1.1
1,106,617 + AO356_04915 0.33 +0.6
1,106,617 + AO356_04915 0.33 +0.6
1,106,617 + AO356_04915 0.33 +1.1
1,106,617 + AO356_04915 0.33 +0.1
1,106,617 + AO356_04915 0.33 -0.7
1,106,618 - AO356_04915 0.33 -0.8
1,106,618 - AO356_04915 0.33 +1.2
1,106,618 - AO356_04915 0.33 +0.3
1,106,618 - AO356_04915 0.33 +0.0
1,106,618 - AO356_04915 0.33 -0.2
1,106,618 - AO356_04915 0.33 -0.0
1,106,618 - AO356_04915 0.33 +0.8
1,106,618 - AO356_04915 0.33 +0.6
1,106,618 - AO356_04915 0.33 -0.6
1,106,618 - AO356_04915 0.33 -0.3
1,106,619 + AO356_04915 0.33 +0.5
1,106,619 + AO356_04915 0.33 -0.5
1,106,619 + AO356_04915 0.33 +0.8
1,106,619 + AO356_04915 0.33 -0.3
1,106,619 + AO356_04915 0.33 -1.1
1,106,619 + AO356_04915 0.33 -2.9
1,106,620 - AO356_04915 0.33 -0.9
1,106,620 - AO356_04915 0.33 +1.1
1,106,620 - AO356_04915 0.33 +0.3
1,106,620 - AO356_04915 0.33 +0.3
1,106,620 - AO356_04915 0.33 +0.7
1,106,620 - AO356_04915 0.33 +1.1
1,106,620 - AO356_04915 0.33 -0.0
1,106,620 - AO356_04915 0.33 -1.1
1,106,620 - AO356_04915 0.33 +1.2
1,106,620 - AO356_04915 0.33 +1.0
1,106,620 - AO356_04915 0.33 -1.2
1,106,620 - AO356_04915 0.33 +0.1
1,106,646 + AO356_04915 0.35 -2.2
1,106,646 + AO356_04915 0.35 -1.9
1,106,646 + AO356_04915 0.35 +0.9
1,106,647 - AO356_04915 0.35 -0.1
1,106,647 - AO356_04915 0.35 +0.5
1,106,647 - AO356_04915 0.35 -0.0
1,106,647 - AO356_04915 0.35 +0.3
1,106,688 + AO356_04915 0.38 +0.3
1,106,688 + AO356_04915 0.38 -1.2
1,106,689 - AO356_04915 0.38 -0.3
1,106,689 - AO356_04915 0.38 +0.7
1,106,700 + AO356_04915 0.39 +0.7
1,106,700 + AO356_04915 0.39 +0.7
1,106,700 + AO356_04915 0.39 +1.6
1,106,700 + AO356_04915 0.39 +0.1
1,106,700 + AO356_04915 0.39 +0.3
1,106,700 + AO356_04915 0.39 +0.7
1,106,701 - AO356_04915 0.39 -2.2
1,106,701 - AO356_04915 0.39 -1.0
1,106,701 - AO356_04915 0.39 -0.3
1,106,701 - AO356_04915 0.39 +0.3
1,106,701 - AO356_04915 0.39 -1.9
1,106,713 + AO356_04915 0.40 -0.2
1,106,714 - AO356_04915 0.40 +0.2
1,106,715 + AO356_04915 0.40 -0.0
1,106,715 + AO356_04915 0.40 +0.7
1,106,861 + AO356_04915 0.52 +1.5
1,106,861 + AO356_04915 0.52 +0.3
1,107,000 + AO356_04915 0.62 +0.1
1,107,054 + AO356_04915 0.67 +0.3
1,107,054 + AO356_04915 0.67 -0.1
1,107,054 + AO356_04915 0.67 +0.5
1,107,054 + AO356_04915 0.67 +0.5
1,107,054 + AO356_04915 0.67 -0.6
1,107,054 + AO356_04915 0.67 +0.4
1,107,055 - AO356_04915 0.67 -0.0
1,107,055 - AO356_04915 0.67 -0.0
1,107,055 - AO356_04915 0.67 +1.2
1,107,055 - AO356_04915 0.67 -0.0
1,107,150 + AO356_04915 0.74 -0.0
1,107,150 + AO356_04915 0.74 +0.2
1,107,150 + AO356_04915 0.74 -0.4
1,107,150 + AO356_04915 0.74 +1.1
1,107,150 + AO356_04915 0.74 -0.4
1,107,150 + AO356_04915 0.74 +0.2
1,107,150 + AO356_04915 0.74 -0.6
1,107,151 - AO356_04915 0.74 -1.0
1,107,151 - AO356_04915 0.74 +0.4
1,107,151 - AO356_04915 0.74 +0.0
1,107,151 - AO356_04915 0.74 -0.0
1,107,151 - AO356_04915 0.74 -0.9
1,107,358 - -0.2
1,107,375 + -0.3
1,107,381 + +0.0
1,107,381 + -1.4
1,107,381 + +1.1
1,107,382 - +1.0
1,107,382 - -0.9
1,107,462 + +0.0
1,107,462 + +1.0
1,107,462 + -0.7
1,107,463 - -1.5
1,107,463 - -0.4
1,107,492 + +0.1
1,107,492 + +0.9
1,107,492 + -1.6
1,107,493 - +0.2
1,107,493 - +0.2
1,107,577 - -0.3
1,107,646 + -1.6
1,107,646 + +0.5
1,107,647 - +0.3
1,107,647 - +0.5
1,107,647 - +0.0
1,107,647 - -0.4
1,107,647 - +0.0
1,107,667 + -0.5
1,107,736 - -1.0
1,107,823 + -0.9
1,107,877 + AO356_04920 0.10 +1.0
1,107,878 - AO356_04920 0.10 +1.1
1,107,878 - AO356_04920 0.10 -0.5
1,107,979 + AO356_04920 0.28 -0.4
1,107,980 - AO356_04920 0.28 -1.0
1,107,980 - AO356_04920 0.28 -0.2
1,108,116 + AO356_04920 0.52 +0.4
1,108,117 - AO356_04920 0.53 -0.6
1,108,186 + AO356_04920 0.65 +0.4
1,108,186 + AO356_04920 0.65 +0.5
1,108,186 + AO356_04920 0.65 -0.1
1,108,187 - AO356_04920 0.65 +0.4
1,108,342 + +0.5
1,108,342 + -1.0
1,108,342 + +0.5
1,108,342 + -0.2
1,108,343 - +0.5
1,108,343 - +0.7
1,108,343 - +0.2
1,108,343 - -0.0
1,108,388 + +0.5
1,108,388 + +1.0
1,108,388 + +1.2
1,108,388 + +0.5
1,108,388 + -1.3
1,108,388 + -1.4
1,108,389 - -0.3
1,108,389 - +1.0
1,108,389 - -0.5
1,108,389 - +0.1
1,108,389 - -0.6
1,108,389 - -0.3
1,108,389 - +0.3
1,108,451 + +1.4
1,108,451 + +0.2
1,108,455 + +0.5
1,108,456 - -1.0
1,108,456 - +0.5
1,108,456 - +1.8
1,108,456 - +0.5

Or see this region's nucleotide sequence