Experiment: Nickel (II) chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04895 and AO356_04900 are separated by 206 nucleotides AO356_04900 and AO356_04905 are separated by 10 nucleotides AO356_04905 and AO356_04910 are separated by 12 nucleotides
AO356_04895: AO356_04895 - porin, at 1,102,088 to 1,103,341
_04895
AO356_04900: AO356_04900 - 4-carboxymuconolactone decarboxylase, at 1,103,548 to 1,103,940
_04900
AO356_04905: AO356_04905 - 3-oxoadipate enol-lactonase, at 1,103,951 to 1,104,766
_04905
AO356_04910: AO356_04910 - 3-carboxy-cis,cis-muconate cycloisomerase, at 1,104,779 to 1,106,143
_04910
Position (kb)
1103
1104
1105 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1103.210 kb on + strand, within AO356_04895 at 1103.211 kb on - strand, within AO356_04895 at 1103.211 kb on - strand, within AO356_04895 at 1103.212 kb on + strand, within AO356_04895 at 1103.213 kb on - strand, within AO356_04895 at 1103.257 kb on + strand at 1103.280 kb on - strand at 1103.280 kb on - strand at 1103.280 kb on - strand at 1103.321 kb on + strand at 1103.339 kb on + strand at 1103.339 kb on + strand at 1103.339 kb on + strand at 1103.340 kb on - strand at 1103.365 kb on + strand at 1103.366 kb on - strand at 1103.549 kb on + strand at 1103.549 kb on + strand at 1103.550 kb on - strand at 1103.550 kb on - strand at 1103.630 kb on + strand, within AO356_04900 at 1103.630 kb on + strand, within AO356_04900 at 1103.631 kb on - strand, within AO356_04900 at 1103.631 kb on - strand, within AO356_04900 at 1103.742 kb on + strand, within AO356_04900 at 1103.767 kb on - strand, within AO356_04900 at 1103.903 kb on - strand at 1103.921 kb on + strand at 1103.921 kb on + strand at 1104.036 kb on + strand, within AO356_04905 at 1104.036 kb on + strand, within AO356_04905 at 1104.037 kb on - strand, within AO356_04905 at 1104.491 kb on - strand, within AO356_04905 at 1104.729 kb on + strand at 1104.729 kb on + strand at 1104.730 kb on - strand at 1104.843 kb on + strand at 1104.843 kb on + strand at 1104.843 kb on + strand at 1104.844 kb on - strand at 1104.926 kb on + strand, within AO356_04910 at 1104.926 kb on + strand, within AO356_04910 at 1104.926 kb on + strand, within AO356_04910 at 1104.927 kb on - strand, within AO356_04910 at 1104.927 kb on - strand, within AO356_04910 at 1105.238 kb on + strand, within AO356_04910 at 1105.705 kb on - strand, within AO356_04910
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM remove 1,103,210 + AO356_04895 0.89 +2.4 1,103,211 - AO356_04895 0.90 +0.3 1,103,211 - AO356_04895 0.90 +0.6 1,103,212 + AO356_04895 0.90 -0.7 1,103,213 - AO356_04895 0.90 -0.3 1,103,257 + -0.6 1,103,280 - +0.3 1,103,280 - -0.0 1,103,280 - -0.1 1,103,321 + +0.3 1,103,339 + +0.3 1,103,339 + -0.4 1,103,339 + -0.5 1,103,340 - +0.2 1,103,365 + +0.5 1,103,366 - -1.7 1,103,549 + -0.4 1,103,549 + +0.4 1,103,550 - +0.3 1,103,550 - -0.5 1,103,630 + AO356_04900 0.21 -1.9 1,103,630 + AO356_04900 0.21 +0.5 1,103,631 - AO356_04900 0.21 +0.0 1,103,631 - AO356_04900 0.21 +0.4 1,103,742 + AO356_04900 0.49 +0.3 1,103,767 - AO356_04900 0.56 +1.0 1,103,903 - -1.3 1,103,921 + -0.9 1,103,921 + -0.2 1,104,036 + AO356_04905 0.10 +0.9 1,104,036 + AO356_04905 0.10 +0.4 1,104,037 - AO356_04905 0.11 +1.0 1,104,491 - AO356_04905 0.66 -0.0 1,104,729 + +0.3 1,104,729 + -1.6 1,104,730 - +0.5 1,104,843 + -0.0 1,104,843 + +1.9 1,104,843 + -0.7 1,104,844 - -0.3 1,104,926 + AO356_04910 0.11 +1.4 1,104,926 + AO356_04910 0.11 +0.4 1,104,926 + AO356_04910 0.11 -1.8 1,104,927 - AO356_04910 0.11 -0.5 1,104,927 - AO356_04910 0.11 -1.3 1,105,238 + AO356_04910 0.34 -0.5 1,105,705 - AO356_04910 0.68 -0.1
Or see this region's nucleotide sequence