Experiment: Nickel (II) chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04895 and AO356_04900 are separated by 206 nucleotides AO356_04900 and AO356_04905 are separated by 10 nucleotides
AO356_04895: AO356_04895 - porin, at 1,102,088 to 1,103,341
_04895
AO356_04900: AO356_04900 - 4-carboxymuconolactone decarboxylase, at 1,103,548 to 1,103,940
_04900
AO356_04905: AO356_04905 - 3-oxoadipate enol-lactonase, at 1,103,951 to 1,104,766
_04905
Position (kb)
1102
1103
1104 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1101.094 kb on - strand at 1101.199 kb on + strand at 1101.199 kb on + strand at 1101.200 kb on - strand at 1101.200 kb on - strand at 1101.200 kb on - strand at 1101.200 kb on - strand at 1101.206 kb on + strand at 1101.206 kb on + strand at 1101.206 kb on + strand at 1101.206 kb on + strand at 1101.206 kb on + strand at 1101.207 kb on - strand at 1101.207 kb on - strand at 1101.207 kb on - strand at 1101.207 kb on - strand at 1101.207 kb on - strand at 1101.207 kb on - strand at 1101.213 kb on - strand at 1101.213 kb on - strand at 1101.213 kb on - strand at 1101.234 kb on + strand at 1101.234 kb on + strand at 1101.235 kb on - strand at 1101.235 kb on - strand at 1101.235 kb on - strand at 1101.316 kb on + strand at 1101.316 kb on + strand at 1101.341 kb on + strand at 1101.341 kb on + strand at 1101.341 kb on + strand at 1101.341 kb on + strand at 1101.341 kb on + strand at 1101.341 kb on + strand at 1101.341 kb on + strand at 1101.342 kb on - strand at 1101.342 kb on - strand at 1101.342 kb on - strand at 1101.342 kb on - strand at 1101.342 kb on - strand at 1101.345 kb on + strand at 1101.345 kb on + strand at 1101.345 kb on + strand at 1101.345 kb on + strand at 1101.346 kb on - strand at 1101.346 kb on - strand at 1101.346 kb on - strand at 1101.346 kb on - strand at 1101.346 kb on - strand at 1101.346 kb on - strand at 1101.346 kb on - strand at 1101.372 kb on - strand at 1101.372 kb on - strand at 1101.810 kb on + strand at 1101.811 kb on - strand at 1101.811 kb on - strand at 1101.811 kb on - strand at 1101.811 kb on - strand at 1101.939 kb on + strand at 1102.074 kb on + strand at 1102.718 kb on + strand, within AO356_04895 at 1102.738 kb on + strand, within AO356_04895 at 1102.779 kb on - strand, within AO356_04895 at 1102.779 kb on - strand, within AO356_04895 at 1102.779 kb on - strand, within AO356_04895 at 1103.210 kb on + strand, within AO356_04895 at 1103.211 kb on - strand, within AO356_04895 at 1103.211 kb on - strand, within AO356_04895 at 1103.212 kb on + strand, within AO356_04895 at 1103.213 kb on - strand, within AO356_04895 at 1103.257 kb on + strand at 1103.280 kb on - strand at 1103.280 kb on - strand at 1103.280 kb on - strand at 1103.321 kb on + strand at 1103.339 kb on + strand at 1103.339 kb on + strand at 1103.339 kb on + strand at 1103.340 kb on - strand at 1103.365 kb on + strand at 1103.366 kb on - strand at 1103.549 kb on + strand at 1103.549 kb on + strand at 1103.550 kb on - strand at 1103.550 kb on - strand at 1103.630 kb on + strand, within AO356_04900 at 1103.630 kb on + strand, within AO356_04900 at 1103.631 kb on - strand, within AO356_04900 at 1103.631 kb on - strand, within AO356_04900 at 1103.742 kb on + strand, within AO356_04900 at 1103.767 kb on - strand, within AO356_04900 at 1103.903 kb on - strand at 1103.921 kb on + strand at 1103.921 kb on + strand at 1104.036 kb on + strand, within AO356_04905 at 1104.036 kb on + strand, within AO356_04905 at 1104.037 kb on - strand, within AO356_04905
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM remove 1,101,094 - +0.2 1,101,199 + -0.2 1,101,199 + +0.1 1,101,200 - +0.2 1,101,200 - -0.0 1,101,200 - +0.7 1,101,200 - +0.6 1,101,206 + +1.5 1,101,206 + +0.5 1,101,206 + +0.2 1,101,206 + +1.0 1,101,206 + +0.7 1,101,207 - +0.4 1,101,207 - -0.3 1,101,207 - +0.3 1,101,207 - -0.7 1,101,207 - +0.8 1,101,207 - +0.6 1,101,213 - +0.0 1,101,213 - -0.0 1,101,213 - -0.9 1,101,234 + +0.5 1,101,234 + +0.4 1,101,235 - +1.1 1,101,235 - -0.7 1,101,235 - +0.4 1,101,316 + -0.1 1,101,316 + +0.2 1,101,341 + -0.3 1,101,341 + +1.4 1,101,341 + -0.2 1,101,341 + +1.0 1,101,341 + +1.4 1,101,341 + +0.0 1,101,341 + -0.4 1,101,342 - +0.5 1,101,342 - -0.3 1,101,342 - -0.5 1,101,342 - -0.0 1,101,342 - -0.6 1,101,345 + -0.1 1,101,345 + -0.5 1,101,345 + -0.5 1,101,345 + -0.0 1,101,346 - +0.5 1,101,346 - +0.9 1,101,346 - -0.0 1,101,346 - +0.9 1,101,346 - -0.2 1,101,346 - -0.5 1,101,346 - +0.5 1,101,372 - +0.3 1,101,372 - +0.2 1,101,810 + +0.7 1,101,811 - -1.0 1,101,811 - -0.0 1,101,811 - +0.4 1,101,811 - -0.5 1,101,939 + +2.3 1,102,074 + +0.4 1,102,718 + AO356_04895 0.50 -0.8 1,102,738 + AO356_04895 0.52 -0.4 1,102,779 - AO356_04895 0.55 +0.0 1,102,779 - AO356_04895 0.55 -0.0 1,102,779 - AO356_04895 0.55 -1.2 1,103,210 + AO356_04895 0.89 +2.4 1,103,211 - AO356_04895 0.90 +0.3 1,103,211 - AO356_04895 0.90 +0.6 1,103,212 + AO356_04895 0.90 -0.7 1,103,213 - AO356_04895 0.90 -0.3 1,103,257 + -0.6 1,103,280 - +0.3 1,103,280 - -0.0 1,103,280 - -0.1 1,103,321 + +0.3 1,103,339 + +0.3 1,103,339 + -0.4 1,103,339 + -0.5 1,103,340 - +0.2 1,103,365 + +0.5 1,103,366 - -1.7 1,103,549 + -0.4 1,103,549 + +0.4 1,103,550 - +0.3 1,103,550 - -0.5 1,103,630 + AO356_04900 0.21 -1.9 1,103,630 + AO356_04900 0.21 +0.5 1,103,631 - AO356_04900 0.21 +0.0 1,103,631 - AO356_04900 0.21 +0.4 1,103,742 + AO356_04900 0.49 +0.3 1,103,767 - AO356_04900 0.56 +1.0 1,103,903 - -1.3 1,103,921 + -0.9 1,103,921 + -0.2 1,104,036 + AO356_04905 0.10 +0.9 1,104,036 + AO356_04905 0.10 +0.4 1,104,037 - AO356_04905 0.11 +1.0
Or see this region's nucleotide sequence