Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04180

Experiment: Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04175 and AO356_04180 are separated by 256 nucleotidesAO356_04180 and AO356_04185 are separated by 68 nucleotides AO356_04175: AO356_04175 - hypothetical protein, at 936,862 to 937,338 _04175 AO356_04180: AO356_04180 - hypothetical protein, at 937,595 to 938,128 _04180 AO356_04185: AO356_04185 - transposase, at 938,197 to 938,898 _04185 Position (kb) 937 938 939Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 936.927 kb on + strand, within AO356_04175at 936.928 kb on - strand, within AO356_04175at 936.968 kb on - strand, within AO356_04175at 937.023 kb on + strand, within AO356_04175at 937.050 kb on + strand, within AO356_04175at 937.181 kb on + strand, within AO356_04175at 937.181 kb on + strand, within AO356_04175at 937.181 kb on + strand, within AO356_04175at 937.182 kb on - strand, within AO356_04175at 937.182 kb on - strand, within AO356_04175at 937.182 kb on - strand, within AO356_04175at 937.272 kb on + strand, within AO356_04175at 937.311 kb on + strandat 937.312 kb on - strandat 937.363 kb on - strandat 937.379 kb on - strandat 937.388 kb on + strandat 937.388 kb on + strandat 937.406 kb on + strandat 937.526 kb on + strandat 937.527 kb on - strandat 937.540 kb on - strandat 937.561 kb on + strandat 937.737 kb on - strand, within AO356_04180at 937.974 kb on - strand, within AO356_04180at 937.974 kb on - strand, within AO356_04180at 938.140 kb on + strandat 938.141 kb on - strandat 938.145 kb on + strandat 938.145 kb on + strandat 938.146 kb on - strandat 938.149 kb on - strandat 938.149 kb on - strandat 938.242 kb on + strandat 938.275 kb on + strand, within AO356_04185at 938.275 kb on + strand, within AO356_04185at 938.276 kb on - strand, within AO356_04185at 938.276 kb on - strand, within AO356_04185at 938.290 kb on - strand, within AO356_04185at 938.397 kb on + strand, within AO356_04185at 938.398 kb on - strand, within AO356_04185at 938.431 kb on + strand, within AO356_04185at 938.431 kb on + strand, within AO356_04185at 938.431 kb on + strand, within AO356_04185at 938.432 kb on - strand, within AO356_04185at 938.432 kb on - strand, within AO356_04185at 938.459 kb on - strand, within AO356_04185at 938.459 kb on - strand, within AO356_04185at 938.472 kb on - strand, within AO356_04185at 938.486 kb on + strand, within AO356_04185at 938.487 kb on - strand, within AO356_04185at 938.487 kb on - strand, within AO356_04185at 938.487 kb on - strand, within AO356_04185at 938.538 kb on - strand, within AO356_04185at 938.544 kb on + strand, within AO356_04185at 938.544 kb on + strand, within AO356_04185at 938.558 kb on + strand, within AO356_04185at 938.588 kb on + strand, within AO356_04185at 938.669 kb on - strand, within AO356_04185at 938.669 kb on - strand, within AO356_04185at 938.705 kb on - strand, within AO356_04185at 938.705 kb on - strand, within AO356_04185at 938.738 kb on + strand, within AO356_04185at 938.745 kb on - strand, within AO356_04185at 938.745 kb on - strand, within AO356_04185at 938.745 kb on - strand, within AO356_04185at 938.792 kb on + strand, within AO356_04185at 938.793 kb on - strand, within AO356_04185at 938.801 kb on + strand, within AO356_04185at 938.802 kb on - strand, within AO356_04185at 938.802 kb on - strand, within AO356_04185at 938.852 kb on - strandat 938.852 kb on - strandat 938.880 kb on + strandat 938.880 kb on + strandat 938.881 kb on - strandat 938.898 kb on + strandat 938.899 kb on - strandat 938.932 kb on - strandat 939.027 kb on + strandat 939.084 kb on - strandat 939.110 kb on - strandat 939.111 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM
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936,927 + AO356_04175 0.14 +0.6
936,928 - AO356_04175 0.14 +0.2
936,968 - AO356_04175 0.22 -0.9
937,023 + AO356_04175 0.34 +0.3
937,050 + AO356_04175 0.39 +1.0
937,181 + AO356_04175 0.67 +0.3
937,181 + AO356_04175 0.67 +0.3
937,181 + AO356_04175 0.67 -0.2
937,182 - AO356_04175 0.67 -0.0
937,182 - AO356_04175 0.67 -1.7
937,182 - AO356_04175 0.67 +0.1
937,272 + AO356_04175 0.86 +0.7
937,311 + -0.0
937,312 - +0.4
937,363 - +0.3
937,379 - -0.5
937,388 + +0.2
937,388 + +0.4
937,406 + -1.2
937,526 + +0.2
937,527 - -0.8
937,540 - +1.0
937,561 + +1.1
937,737 - AO356_04180 0.27 -1.0
937,974 - AO356_04180 0.71 -0.4
937,974 - AO356_04180 0.71 -1.1
938,140 + -1.5
938,141 - -0.9
938,145 + +0.4
938,145 + -0.0
938,146 - +1.3
938,149 - +0.2
938,149 - +0.6
938,242 + -0.2
938,275 + AO356_04185 0.11 -0.9
938,275 + AO356_04185 0.11 +0.7
938,276 - AO356_04185 0.11 +0.6
938,276 - AO356_04185 0.11 -1.1
938,290 - AO356_04185 0.13 +0.4
938,397 + AO356_04185 0.28 -0.6
938,398 - AO356_04185 0.29 -0.8
938,431 + AO356_04185 0.33 +0.0
938,431 + AO356_04185 0.33 +0.8
938,431 + AO356_04185 0.33 -0.4
938,432 - AO356_04185 0.33 -1.2
938,432 - AO356_04185 0.33 +1.0
938,459 - AO356_04185 0.37 -1.0
938,459 - AO356_04185 0.37 -0.2
938,472 - AO356_04185 0.39 -0.8
938,486 + AO356_04185 0.41 -0.3
938,487 - AO356_04185 0.41 +0.3
938,487 - AO356_04185 0.41 -1.3
938,487 - AO356_04185 0.41 -0.6
938,538 - AO356_04185 0.49 -0.3
938,544 + AO356_04185 0.49 +0.3
938,544 + AO356_04185 0.49 -1.2
938,558 + AO356_04185 0.51 +0.6
938,588 + AO356_04185 0.56 +0.4
938,669 - AO356_04185 0.67 +0.1
938,669 - AO356_04185 0.67 -1.0
938,705 - AO356_04185 0.72 +0.8
938,705 - AO356_04185 0.72 -0.6
938,738 + AO356_04185 0.77 +2.0
938,745 - AO356_04185 0.78 +0.2
938,745 - AO356_04185 0.78 -3.6
938,745 - AO356_04185 0.78 +0.2
938,792 + AO356_04185 0.85 +0.6
938,793 - AO356_04185 0.85 -0.3
938,801 + AO356_04185 0.86 +0.8
938,802 - AO356_04185 0.86 -0.2
938,802 - AO356_04185 0.86 -1.6
938,852 - +0.3
938,852 - +0.8
938,880 + +0.7
938,880 + -1.8
938,881 - +0.4
938,898 + +0.7
938,899 - +0.8
938,932 - -0.1
939,027 + +1.2
939,084 - +0.3
939,110 - +0.2
939,111 + -0.7

Or see this region's nucleotide sequence