Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24550 and RR42_RS24555 are separated by 818 nucleotides RR42_RS24555 and RR42_RS24560 are separated by 35 nucleotides
RR42_RS24550: RR42_RS24550 - hypothetical protein, at 839,922 to 840,104
_RS24550
RR42_RS24555: RR42_RS24555 - succinate-semialdehyde dehydrogenase, at 840,923 to 842,407
_RS24555
RR42_RS24560: RR42_RS24560 - alcohol dehydrogenase, at 842,443 to 843,612
_RS24560
Position (kb) 840
841
842
843 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 839.971 kb on - strand, within RR42_RS24550 at 840.064 kb on - strand, within RR42_RS24550 at 840.092 kb on + strand at 840.217 kb on - strand at 840.226 kb on - strand at 840.256 kb on + strand at 840.257 kb on - strand at 840.280 kb on + strand at 840.280 kb on + strand at 840.296 kb on - strand at 840.302 kb on + strand at 840.345 kb on + strand at 840.366 kb on + strand at 840.366 kb on + strand at 840.366 kb on + strand at 840.367 kb on - strand at 840.370 kb on - strand at 840.464 kb on + strand at 840.465 kb on - strand at 840.544 kb on - strand at 840.590 kb on + strand at 840.739 kb on + strand at 840.739 kb on + strand at 840.740 kb on - strand at 840.796 kb on + strand at 840.796 kb on + strand at 840.796 kb on + strand at 840.797 kb on - strand at 840.797 kb on - strand at 840.797 kb on - strand at 840.797 kb on - strand at 840.797 kb on - strand at 840.844 kb on - strand at 840.844 kb on - strand at 840.864 kb on + strand at 840.864 kb on + strand at 840.865 kb on - strand at 840.866 kb on + strand at 840.866 kb on + strand at 840.866 kb on + strand at 840.866 kb on + strand at 840.866 kb on + strand at 840.866 kb on + strand at 840.867 kb on - strand at 840.867 kb on - strand at 840.867 kb on - strand at 840.907 kb on + strand at 840.907 kb on + strand at 840.907 kb on + strand at 840.907 kb on + strand at 840.907 kb on + strand at 840.907 kb on + strand at 840.907 kb on + strand at 840.908 kb on - strand at 840.908 kb on - strand at 840.908 kb on - strand at 840.922 kb on - strand at 840.922 kb on - strand at 840.935 kb on - strand at 840.946 kb on + strand at 840.947 kb on - strand at 840.947 kb on - strand at 841.177 kb on + strand, within RR42_RS24555 at 841.177 kb on + strand, within RR42_RS24555 at 841.177 kb on + strand, within RR42_RS24555 at 841.178 kb on - strand, within RR42_RS24555 at 841.337 kb on + strand, within RR42_RS24555 at 841.337 kb on + strand, within RR42_RS24555 at 841.338 kb on - strand, within RR42_RS24555 at 841.338 kb on - strand, within RR42_RS24555 at 841.338 kb on - strand, within RR42_RS24555 at 841.490 kb on - strand, within RR42_RS24555 at 841.862 kb on + strand, within RR42_RS24555 at 841.862 kb on + strand, within RR42_RS24555 at 841.863 kb on - strand, within RR42_RS24555 at 842.130 kb on + strand, within RR42_RS24555 at 842.192 kb on + strand, within RR42_RS24555 at 842.192 kb on + strand, within RR42_RS24555 at 842.213 kb on + strand, within RR42_RS24555 at 842.213 kb on + strand, within RR42_RS24555 at 842.261 kb on + strand at 842.372 kb on + strand at 842.373 kb on - strand at 842.388 kb on - strand at 842.388 kb on - strand at 842.388 kb on - strand at 842.466 kb on - strand at 842.818 kb on + strand, within RR42_RS24560 at 842.818 kb on + strand, within RR42_RS24560 at 842.818 kb on + strand, within RR42_RS24560 at 842.818 kb on + strand, within RR42_RS24560 at 842.818 kb on + strand, within RR42_RS24560 at 842.819 kb on - strand, within RR42_RS24560 at 842.819 kb on - strand, within RR42_RS24560 at 842.902 kb on - strand, within RR42_RS24560 at 842.902 kb on - strand, within RR42_RS24560 at 842.960 kb on - strand, within RR42_RS24560 at 843.062 kb on - strand, within RR42_RS24560 at 843.062 kb on - strand, within RR42_RS24560 at 843.062 kb on - strand, within RR42_RS24560 at 843.125 kb on + strand, within RR42_RS24560 at 843.141 kb on - strand, within RR42_RS24560 at 843.257 kb on - strand, within RR42_RS24560
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 839,971 - RR42_RS24550 0.27 -0.3 840,064 - RR42_RS24550 0.78 -0.7 840,092 + +0.0 840,217 - -0.6 840,226 - -0.0 840,256 + +1.0 840,257 - -0.2 840,280 + -1.0 840,280 + -0.6 840,296 - +0.7 840,302 + +0.1 840,345 + -1.0 840,366 + -0.8 840,366 + +0.3 840,366 + +0.0 840,367 - -0.6 840,370 - -2.8 840,464 + +0.2 840,465 - +0.2 840,544 - -0.8 840,590 + -0.1 840,739 + -0.0 840,739 + -0.8 840,740 - -0.7 840,796 + +0.1 840,796 + +0.7 840,796 + +0.5 840,797 - +0.6 840,797 - +0.1 840,797 - -0.9 840,797 - +0.4 840,797 - +0.3 840,844 - +0.1 840,844 - -0.4 840,864 + -0.6 840,864 + +0.1 840,865 - -0.5 840,866 + +0.3 840,866 + -0.3 840,866 + -0.9 840,866 + +0.4 840,866 + -0.6 840,866 + -1.8 840,867 - -0.3 840,867 - -0.1 840,867 - -0.2 840,907 + +0.7 840,907 + +1.1 840,907 + +0.2 840,907 + -0.4 840,907 + -0.4 840,907 + -0.8 840,907 + -0.5 840,908 - -1.2 840,908 - -0.0 840,908 - -0.1 840,922 - -0.0 840,922 - +0.5 840,935 - +0.1 840,946 + +1.4 840,947 - -0.6 840,947 - -0.2 841,177 + RR42_RS24555 0.17 +0.6 841,177 + RR42_RS24555 0.17 +0.0 841,177 + RR42_RS24555 0.17 +0.4 841,178 - RR42_RS24555 0.17 -1.0 841,337 + RR42_RS24555 0.28 -0.5 841,337 + RR42_RS24555 0.28 -0.7 841,338 - RR42_RS24555 0.28 -0.1 841,338 - RR42_RS24555 0.28 -0.5 841,338 - RR42_RS24555 0.28 -0.6 841,490 - RR42_RS24555 0.38 +0.8 841,862 + RR42_RS24555 0.63 +1.0 841,862 + RR42_RS24555 0.63 +1.2 841,863 - RR42_RS24555 0.63 +0.5 842,130 + RR42_RS24555 0.81 -0.0 842,192 + RR42_RS24555 0.85 -0.2 842,192 + RR42_RS24555 0.85 +0.5 842,213 + RR42_RS24555 0.87 +0.5 842,213 + RR42_RS24555 0.87 +0.9 842,261 + -0.0 842,372 + +1.0 842,373 - -0.2 842,388 - +0.4 842,388 - -0.6 842,388 - -0.6 842,466 - -2.3 842,818 + RR42_RS24560 0.32 -0.0 842,818 + RR42_RS24560 0.32 -0.2 842,818 + RR42_RS24560 0.32 +0.3 842,818 + RR42_RS24560 0.32 +1.6 842,818 + RR42_RS24560 0.32 -0.6 842,819 - RR42_RS24560 0.32 +0.5 842,819 - RR42_RS24560 0.32 +0.2 842,902 - RR42_RS24560 0.39 -0.3 842,902 - RR42_RS24560 0.39 -0.0 842,960 - RR42_RS24560 0.44 -0.6 843,062 - RR42_RS24560 0.53 +0.2 843,062 - RR42_RS24560 0.53 -1.0 843,062 - RR42_RS24560 0.53 -0.5 843,125 + RR42_RS24560 0.58 -1.3 843,141 - RR42_RS24560 0.60 +0.0 843,257 - RR42_RS24560 0.70 +0.3
Or see this region's nucleotide sequence