Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS16040 and RR42_RS16045 are separated by 267 nucleotides RR42_RS16045 and RR42_RS16050 are separated by 46 nucleotides RR42_RS16050 and RR42_RS16055 are separated by 138 nucleotides
RR42_RS16040: RR42_RS16040 - membrane protein, at 3,474,414 to 3,476,270
_RS16040
RR42_RS16045: RR42_RS16045 - hypothetical protein, at 3,476,538 to 3,476,726
_RS16045
RR42_RS16050: RR42_RS16050 - segregation and condensation protein A, at 3,476,773 to 3,477,654
_RS16050
RR42_RS16055: RR42_RS16055 - pantothenate synthetase, at 3,477,793 to 3,478,641
_RS16055
Position (kb)
3476
3477
3478 Strain fitness (log2 ratio)
-2
-1
0
1 at 3475.987 kb on + strand, within RR42_RS16040 at 3475.987 kb on + strand, within RR42_RS16040 at 3476.039 kb on + strand, within RR42_RS16040 at 3476.039 kb on + strand, within RR42_RS16040 at 3476.040 kb on - strand, within RR42_RS16040 at 3476.040 kb on - strand, within RR42_RS16040 at 3476.040 kb on - strand, within RR42_RS16040 at 3476.041 kb on + strand, within RR42_RS16040 at 3476.041 kb on + strand, within RR42_RS16040 at 3476.041 kb on + strand, within RR42_RS16040 at 3476.041 kb on + strand, within RR42_RS16040 at 3476.041 kb on + strand, within RR42_RS16040 at 3476.041 kb on + strand, within RR42_RS16040 at 3476.041 kb on + strand, within RR42_RS16040 at 3476.041 kb on + strand, within RR42_RS16040 at 3476.042 kb on - strand, within RR42_RS16040 at 3476.042 kb on - strand, within RR42_RS16040 at 3476.042 kb on - strand, within RR42_RS16040 at 3476.175 kb on + strand at 3476.497 kb on + strand at 3476.770 kb on + strand at 3477.640 kb on + strand at 3477.641 kb on - strand at 3477.694 kb on + strand at 3477.694 kb on + strand at 3477.694 kb on + strand at 3477.695 kb on - strand at 3477.721 kb on + strand at 3477.721 kb on + strand at 3477.769 kb on + strand at 3477.769 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 3,475,987 + RR42_RS16040 0.85 -0.6 3,475,987 + RR42_RS16040 0.85 -0.3 3,476,039 + RR42_RS16040 0.88 -0.5 3,476,039 + RR42_RS16040 0.88 +0.2 3,476,040 - RR42_RS16040 0.88 +0.8 3,476,040 - RR42_RS16040 0.88 +1.3 3,476,040 - RR42_RS16040 0.88 +1.4 3,476,041 + RR42_RS16040 0.88 +0.9 3,476,041 + RR42_RS16040 0.88 -0.6 3,476,041 + RR42_RS16040 0.88 +0.2 3,476,041 + RR42_RS16040 0.88 -0.1 3,476,041 + RR42_RS16040 0.88 +0.4 3,476,041 + RR42_RS16040 0.88 +0.3 3,476,041 + RR42_RS16040 0.88 +1.0 3,476,041 + RR42_RS16040 0.88 +0.3 3,476,042 - RR42_RS16040 0.88 -0.7 3,476,042 - RR42_RS16040 0.88 +0.1 3,476,042 - RR42_RS16040 0.88 -0.8 3,476,175 + +0.4 3,476,497 + +0.4 3,476,770 + +0.3 3,477,640 + -0.2 3,477,641 - +0.5 3,477,694 + -0.5 3,477,694 + -0.3 3,477,694 + -0.3 3,477,695 - +1.1 3,477,721 + +0.3 3,477,721 + -2.2 3,477,769 + +0.2 3,477,769 + -0.7
Or see this region's nucleotide sequence