Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04470

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04465 and RR42_RS04470 are separated by 138 nucleotidesRR42_RS04470 and RR42_RS04475 are separated by 93 nucleotides RR42_RS04465: RR42_RS04465 - aspartate aminotransferase, at 998,245 to 999,360 _RS04465 RR42_RS04470: RR42_RS04470 - prephenate dehydrogenase, at 999,499 to 1,000,407 _RS04470 RR42_RS04475: RR42_RS04475 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,000,501 to 1,001,811 _RS04475 Position (kb) 999 1000 1001Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 998.597 kb on - strand, within RR42_RS04465at 998.620 kb on + strand, within RR42_RS04465at 998.737 kb on - strand, within RR42_RS04465at 998.748 kb on + strand, within RR42_RS04465at 998.748 kb on + strand, within RR42_RS04465at 998.749 kb on - strand, within RR42_RS04465at 998.749 kb on - strand, within RR42_RS04465at 998.842 kb on + strand, within RR42_RS04465at 998.842 kb on + strand, within RR42_RS04465at 998.842 kb on + strand, within RR42_RS04465at 998.843 kb on - strand, within RR42_RS04465at 998.843 kb on - strand, within RR42_RS04465at 998.843 kb on - strand, within RR42_RS04465at 998.851 kb on + strand, within RR42_RS04465at 998.851 kb on + strand, within RR42_RS04465at 998.852 kb on - strand, within RR42_RS04465at 998.852 kb on - strand, within RR42_RS04465at 998.852 kb on - strand, within RR42_RS04465at 998.852 kb on - strand, within RR42_RS04465at 998.873 kb on - strand, within RR42_RS04465at 998.899 kb on + strand, within RR42_RS04465at 998.900 kb on - strand, within RR42_RS04465at 998.915 kb on + strand, within RR42_RS04465at 998.938 kb on + strand, within RR42_RS04465at 998.939 kb on - strand, within RR42_RS04465at 998.966 kb on - strand, within RR42_RS04465at 999.154 kb on + strand, within RR42_RS04465at 999.154 kb on + strand, within RR42_RS04465at 999.154 kb on + strand, within RR42_RS04465at 999.154 kb on + strand, within RR42_RS04465at 999.154 kb on + strand, within RR42_RS04465at 999.155 kb on - strand, within RR42_RS04465at 999.155 kb on - strand, within RR42_RS04465at 999.155 kb on - strand, within RR42_RS04465at 999.155 kb on - strand, within RR42_RS04465at 999.155 kb on - strand, within RR42_RS04465at 999.155 kb on - strand, within RR42_RS04465at 999.155 kb on - strand, within RR42_RS04465at 999.254 kb on + strandat 999.295 kb on - strandat 999.358 kb on + strandat 999.359 kb on - strandat 999.454 kb on + strandat 999.454 kb on + strandat 999.454 kb on + strandat 999.454 kb on + strandat 999.454 kb on + strandat 999.455 kb on - strandat 999.455 kb on - strandat 999.455 kb on - strandat 999.492 kb on + strandat 999.787 kb on - strandat 999.934 kb on + strand, within RR42_RS04470at 999.934 kb on + strand, within RR42_RS04470at 999.934 kb on + strand, within RR42_RS04470at 999.934 kb on + strand, within RR42_RS04470at 999.935 kb on - strand, within RR42_RS04470at 999.935 kb on - strand, within RR42_RS04470at 999.935 kb on - strand, within RR42_RS04470at 1000.267 kb on + strand, within RR42_RS04470at 1000.267 kb on + strand, within RR42_RS04470at 1000.268 kb on - strand, within RR42_RS04470at 1000.332 kb on + strandat 1000.332 kb on + strandat 1000.333 kb on - strandat 1000.488 kb on + strandat 1000.489 kb on - strandat 1000.489 kb on - strandat 1000.828 kb on + strand, within RR42_RS04475at 1000.829 kb on - strand, within RR42_RS04475at 1000.851 kb on + strand, within RR42_RS04475at 1000.852 kb on - strand, within RR42_RS04475at 1000.852 kb on - strand, within RR42_RS04475at 1000.852 kb on - strand, within RR42_RS04475at 1000.852 kb on - strand, within RR42_RS04475at 1000.898 kb on + strand, within RR42_RS04475at 1000.898 kb on + strand, within RR42_RS04475at 1000.915 kb on + strand, within RR42_RS04475at 1001.104 kb on + strand, within RR42_RS04475at 1001.248 kb on + strand, within RR42_RS04475at 1001.249 kb on - strand, within RR42_RS04475at 1001.347 kb on - strand, within RR42_RS04475

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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998,597 - RR42_RS04465 0.32 +0.8
998,620 + RR42_RS04465 0.34 -1.1
998,737 - RR42_RS04465 0.44 -0.7
998,748 + RR42_RS04465 0.45 +0.5
998,748 + RR42_RS04465 0.45 +0.0
998,749 - RR42_RS04465 0.45 -0.5
998,749 - RR42_RS04465 0.45 +0.5
998,842 + RR42_RS04465 0.53 -0.4
998,842 + RR42_RS04465 0.53 -1.5
998,842 + RR42_RS04465 0.53 -0.7
998,843 - RR42_RS04465 0.54 +0.0
998,843 - RR42_RS04465 0.54 +0.3
998,843 - RR42_RS04465 0.54 -0.4
998,851 + RR42_RS04465 0.54 -0.8
998,851 + RR42_RS04465 0.54 -0.4
998,852 - RR42_RS04465 0.54 +0.8
998,852 - RR42_RS04465 0.54 +0.8
998,852 - RR42_RS04465 0.54 +1.2
998,852 - RR42_RS04465 0.54 -0.1
998,873 - RR42_RS04465 0.56 +0.4
998,899 + RR42_RS04465 0.59 +0.7
998,900 - RR42_RS04465 0.59 -0.1
998,915 + RR42_RS04465 0.60 -0.1
998,938 + RR42_RS04465 0.62 +1.6
998,939 - RR42_RS04465 0.62 +0.3
998,966 - RR42_RS04465 0.65 -0.8
999,154 + RR42_RS04465 0.81 +0.3
999,154 + RR42_RS04465 0.81 -0.7
999,154 + RR42_RS04465 0.81 -0.3
999,154 + RR42_RS04465 0.81 -0.1
999,154 + RR42_RS04465 0.81 -0.1
999,155 - RR42_RS04465 0.82 +0.3
999,155 - RR42_RS04465 0.82 +0.3
999,155 - RR42_RS04465 0.82 -1.1
999,155 - RR42_RS04465 0.82 +0.1
999,155 - RR42_RS04465 0.82 -0.3
999,155 - RR42_RS04465 0.82 -0.3
999,155 - RR42_RS04465 0.82 +0.0
999,254 + +1.6
999,295 - +1.6
999,358 + -0.2
999,359 - -0.4
999,454 + -1.3
999,454 + -1.0
999,454 + -0.4
999,454 + +0.1
999,454 + +0.4
999,455 - -0.3
999,455 - -0.7
999,455 - -0.0
999,492 + +0.2
999,787 - +0.0
999,934 + RR42_RS04470 0.48 -2.0
999,934 + RR42_RS04470 0.48 -3.7
999,934 + RR42_RS04470 0.48 -2.8
999,934 + RR42_RS04470 0.48 +0.0
999,935 - RR42_RS04470 0.48 -1.5
999,935 - RR42_RS04470 0.48 -2.5
999,935 - RR42_RS04470 0.48 -5.4
1,000,267 + RR42_RS04470 0.84 -4.4
1,000,267 + RR42_RS04470 0.84 -2.0
1,000,268 - RR42_RS04470 0.85 -3.7
1,000,332 + -3.0
1,000,332 + -3.1
1,000,333 - -3.7
1,000,488 + -1.3
1,000,489 - -5.3
1,000,489 - -4.4
1,000,828 + RR42_RS04475 0.25 -4.2
1,000,829 - RR42_RS04475 0.25 -2.3
1,000,851 + RR42_RS04475 0.27 -4.5
1,000,852 - RR42_RS04475 0.27 -1.3
1,000,852 - RR42_RS04475 0.27 -6.2
1,000,852 - RR42_RS04475 0.27 -5.1
1,000,852 - RR42_RS04475 0.27 -2.2
1,000,898 + RR42_RS04475 0.30 -3.3
1,000,898 + RR42_RS04475 0.30 -4.6
1,000,915 + RR42_RS04475 0.32 -5.6
1,001,104 + RR42_RS04475 0.46 -5.9
1,001,248 + RR42_RS04475 0.57 -2.6
1,001,249 - RR42_RS04475 0.57 -3.9
1,001,347 - RR42_RS04475 0.65 -1.0

Or see this region's nucleotide sequence