Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03910

Experiment: L-Glutamine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS03905 and RR42_RS03910 are separated by 169 nucleotidesRR42_RS03910 and RR42_RS03915 overlap by 4 nucleotides RR42_RS03905: RR42_RS03905 - hypothetical protein, at 860,946 to 861,863 _RS03905 RR42_RS03910: RR42_RS03910 - (2Fe-2S)-binding protein, at 862,033 to 862,506 _RS03910 RR42_RS03915: RR42_RS03915 - hypothetical protein, at 862,503 to 864,788 _RS03915 Position (kb) 862 863Strain fitness (log2 ratio) -2 -1 0 1 2at 861.064 kb on + strand, within RR42_RS03905at 861.281 kb on + strand, within RR42_RS03905at 861.281 kb on + strand, within RR42_RS03905at 861.282 kb on - strand, within RR42_RS03905at 861.282 kb on - strand, within RR42_RS03905at 861.282 kb on - strand, within RR42_RS03905at 861.539 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.557 kb on - strand, within RR42_RS03905at 861.590 kb on - strand, within RR42_RS03905at 861.784 kb on - strandat 861.785 kb on + strandat 861.785 kb on + strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.889 kb on + strandat 862.441 kb on + strand, within RR42_RS03910at 862.442 kb on - strand, within RR42_RS03910at 862.442 kb on - strand, within RR42_RS03910at 862.523 kb on + strandat 862.524 kb on - strandat 862.737 kb on + strand, within RR42_RS03915at 862.738 kb on - strand, within RR42_RS03915at 862.814 kb on - strand, within RR42_RS03915at 862.814 kb on - strand, within RR42_RS03915at 863.052 kb on + strand, within RR42_RS03915

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
remove
861,064 + RR42_RS03905 0.13 +1.2
861,281 + RR42_RS03905 0.36 +0.1
861,281 + RR42_RS03905 0.36 +1.1
861,282 - RR42_RS03905 0.37 +1.7
861,282 - RR42_RS03905 0.37 +1.5
861,282 - RR42_RS03905 0.37 +1.5
861,539 + RR42_RS03905 0.65 -0.1
861,556 + RR42_RS03905 0.66 -0.4
861,556 + RR42_RS03905 0.66 +2.1
861,556 + RR42_RS03905 0.66 +0.5
861,556 + RR42_RS03905 0.66 +0.8
861,556 + RR42_RS03905 0.66 +0.4
861,557 - RR42_RS03905 0.67 -0.5
861,590 - RR42_RS03905 0.70 +0.7
861,784 - +0.3
861,785 + +0.4
861,785 + +0.5
861,786 - +0.1
861,786 - +0.1
861,786 - +0.1
861,786 - +0.5
861,786 - -0.0
861,786 - -0.4
861,786 - +0.7
861,786 - +0.4
861,889 + -0.8
862,441 + RR42_RS03910 0.86 +1.7
862,442 - RR42_RS03910 0.86 +1.3
862,442 - RR42_RS03910 0.86 +0.2
862,523 + -2.2
862,524 - +0.2
862,737 + RR42_RS03915 0.10 +0.6
862,738 - RR42_RS03915 0.10 +0.7
862,814 - RR42_RS03915 0.14 +0.4
862,814 - RR42_RS03915 0.14 +0.1
863,052 + RR42_RS03915 0.24 +0.1

Or see this region's nucleotide sequence