Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02860

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02855 and RR42_RS02860 are separated by 94 nucleotidesRR42_RS02860 and RR42_RS02865 are separated by 123 nucleotides RR42_RS02855: RR42_RS02855 - dimethylallyladenosine tRNA methylthiotransferase, at 636,191 to 637,543 _RS02855 RR42_RS02860: RR42_RS02860 - hypothetical protein, at 637,638 to 638,018 _RS02860 RR42_RS02865: RR42_RS02865 - chloride channel protein, at 638,142 to 639,830 _RS02865 Position (kb) 637 638 639Strain fitness (log2 ratio) -2 -1 0 1 2at 636.688 kb on - strand, within RR42_RS02855at 636.789 kb on + strand, within RR42_RS02855at 636.790 kb on - strand, within RR42_RS02855at 636.790 kb on - strand, within RR42_RS02855at 636.790 kb on - strand, within RR42_RS02855at 636.838 kb on - strand, within RR42_RS02855at 636.931 kb on - strand, within RR42_RS02855at 637.005 kb on - strand, within RR42_RS02855at 637.005 kb on - strand, within RR42_RS02855at 637.060 kb on - strand, within RR42_RS02855at 637.060 kb on - strand, within RR42_RS02855at 637.069 kb on - strand, within RR42_RS02855at 637.069 kb on - strand, within RR42_RS02855at 637.475 kb on - strandat 637.519 kb on - strandat 637.519 kb on - strandat 637.519 kb on - strandat 637.634 kb on - strandat 637.634 kb on - strandat 637.639 kb on + strandat 637.640 kb on - strandat 637.640 kb on - strandat 637.640 kb on - strandat 637.640 kb on - strandat 637.763 kb on + strand, within RR42_RS02860at 637.960 kb on - strand, within RR42_RS02860at 637.960 kb on - strand, within RR42_RS02860at 638.106 kb on + strandat 638.107 kb on - strandat 638.107 kb on - strandat 638.107 kb on - strandat 638.107 kb on - strandat 638.110 kb on - strandat 638.110 kb on - strandat 638.110 kb on - strandat 638.110 kb on - strandat 638.110 kb on - strandat 638.143 kb on + strandat 638.144 kb on - strandat 638.144 kb on - strandat 638.413 kb on + strand, within RR42_RS02865at 638.413 kb on + strand, within RR42_RS02865at 638.413 kb on + strand, within RR42_RS02865at 638.413 kb on + strand, within RR42_RS02865at 638.414 kb on - strand, within RR42_RS02865at 638.419 kb on + strand, within RR42_RS02865at 638.575 kb on + strand, within RR42_RS02865at 638.575 kb on + strand, within RR42_RS02865at 638.575 kb on + strand, within RR42_RS02865at 638.576 kb on - strand, within RR42_RS02865at 638.608 kb on + strand, within RR42_RS02865at 638.609 kb on - strand, within RR42_RS02865at 638.612 kb on - strand, within RR42_RS02865at 638.902 kb on - strand, within RR42_RS02865at 638.941 kb on + strand, within RR42_RS02865at 638.941 kb on + strand, within RR42_RS02865at 638.941 kb on + strand, within RR42_RS02865at 638.941 kb on + strand, within RR42_RS02865at 638.942 kb on - strand, within RR42_RS02865at 638.942 kb on - strand, within RR42_RS02865at 638.942 kb on - strand, within RR42_RS02865at 638.942 kb on - strand, within RR42_RS02865at 638.942 kb on - strand, within RR42_RS02865at 638.942 kb on - strand, within RR42_RS02865

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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636,688 - RR42_RS02855 0.37 +0.3
636,789 + RR42_RS02855 0.44 -0.8
636,790 - RR42_RS02855 0.44 +0.3
636,790 - RR42_RS02855 0.44 +0.5
636,790 - RR42_RS02855 0.44 -0.9
636,838 - RR42_RS02855 0.48 -0.3
636,931 - RR42_RS02855 0.55 -0.1
637,005 - RR42_RS02855 0.60 +0.1
637,005 - RR42_RS02855 0.60 -0.9
637,060 - RR42_RS02855 0.64 +0.4
637,060 - RR42_RS02855 0.64 -0.0
637,069 - RR42_RS02855 0.65 +0.1
637,069 - RR42_RS02855 0.65 +0.5
637,475 - -0.3
637,519 - -0.6
637,519 - +0.7
637,519 - -1.0
637,634 - -0.7
637,634 - -1.2
637,639 + -0.1
637,640 - +0.8
637,640 - +2.0
637,640 - +0.4
637,640 - -0.6
637,763 + RR42_RS02860 0.33 +1.1
637,960 - RR42_RS02860 0.85 +0.1
637,960 - RR42_RS02860 0.85 +0.6
638,106 + +0.1
638,107 - +1.1
638,107 - +0.6
638,107 - +0.1
638,107 - +0.6
638,110 - -0.9
638,110 - -0.1
638,110 - -1.2
638,110 - -0.1
638,110 - +0.2
638,143 + -0.2
638,144 - +2.3
638,144 - +0.4
638,413 + RR42_RS02865 0.16 +0.5
638,413 + RR42_RS02865 0.16 +0.1
638,413 + RR42_RS02865 0.16 +0.3
638,413 + RR42_RS02865 0.16 +0.4
638,414 - RR42_RS02865 0.16 -0.8
638,419 + RR42_RS02865 0.16 -0.1
638,575 + RR42_RS02865 0.26 -0.6
638,575 + RR42_RS02865 0.26 -0.0
638,575 + RR42_RS02865 0.26 -0.1
638,576 - RR42_RS02865 0.26 +0.2
638,608 + RR42_RS02865 0.28 -1.0
638,609 - RR42_RS02865 0.28 -0.5
638,612 - RR42_RS02865 0.28 +1.1
638,902 - RR42_RS02865 0.45 -0.3
638,941 + RR42_RS02865 0.47 +0.4
638,941 + RR42_RS02865 0.47 +1.9
638,941 + RR42_RS02865 0.47 -0.6
638,941 + RR42_RS02865 0.47 -0.2
638,942 - RR42_RS02865 0.47 +1.5
638,942 - RR42_RS02865 0.47 -0.2
638,942 - RR42_RS02865 0.47 -0.2
638,942 - RR42_RS02865 0.47 -2.2
638,942 - RR42_RS02865 0.47 +0.3
638,942 - RR42_RS02865 0.47 +0.3

Or see this region's nucleotide sequence