Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS05235 and RALBFv3_RS05240 overlap by 4 nucleotides RALBFv3_RS05240 and RALBFv3_RS23695 are separated by 100 nucleotides RALBFv3_RS23695 and RALBFv3_RS05250 overlap by 4 nucleotides RALBFv3_RS05250 and RALBFv3_RS05255 are separated by 10 nucleotides
RALBFv3_RS05235: RALBFv3_RS05235 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 1,160,522 to 1,161,493
_RS05235
RALBFv3_RS05240: RALBFv3_RS05240 - N-acetyltransferase, at 1,161,490 to 1,162,023
_RS05240
RALBFv3_RS23695: RALBFv3_RS23695 - cysteine methyltransferase, at 1,162,124 to 1,162,638
_RS23695
RALBFv3_RS05250: RALBFv3_RS05250 - prolyl 4-hydroxylase, at 1,162,635 to 1,163,369
_RS05250
RALBFv3_RS05255: RALBFv3_RS05255 - DNA oxidative demethylase AlkB, at 1,163,380 to 1,164,036
_RS05255
Position (kb) 1162
1163 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1161.160 kb on + strand, within RALBFv3_RS05235 at 1161.757 kb on + strand, within RALBFv3_RS05240 at 1161.757 kb on + strand, within RALBFv3_RS05240 at 1161.758 kb on - strand, within RALBFv3_RS05240 at 1161.907 kb on + strand, within RALBFv3_RS05240 at 1161.907 kb on + strand, within RALBFv3_RS05240 at 1161.908 kb on - strand, within RALBFv3_RS05240 at 1161.908 kb on - strand, within RALBFv3_RS05240 at 1162.451 kb on + strand, within RALBFv3_RS23695 at 1162.452 kb on - strand, within RALBFv3_RS23695 at 1162.807 kb on - strand, within RALBFv3_RS05250 at 1162.854 kb on + strand, within RALBFv3_RS05250 at 1162.855 kb on - strand, within RALBFv3_RS05250 at 1162.858 kb on + strand, within RALBFv3_RS05250 at 1162.860 kb on + strand, within RALBFv3_RS05250 at 1162.860 kb on + strand, within RALBFv3_RS05250 at 1162.860 kb on + strand, within RALBFv3_RS05250 at 1162.860 kb on + strand, within RALBFv3_RS05250 at 1162.861 kb on - strand, within RALBFv3_RS05250 at 1162.861 kb on - strand, within RALBFv3_RS05250 at 1162.861 kb on - strand, within RALBFv3_RS05250 at 1162.861 kb on - strand, within RALBFv3_RS05250 at 1162.861 kb on - strand, within RALBFv3_RS05250 at 1162.869 kb on + strand, within RALBFv3_RS05250 at 1162.912 kb on - strand, within RALBFv3_RS05250 at 1163.049 kb on + strand, within RALBFv3_RS05250 at 1163.050 kb on - strand, within RALBFv3_RS05250 at 1163.050 kb on - strand, within RALBFv3_RS05250 at 1163.089 kb on - strand, within RALBFv3_RS05250 at 1163.089 kb on - strand, within RALBFv3_RS05250 at 1163.264 kb on - strand, within RALBFv3_RS05250
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,161,160 + RALBFv3_RS05235 0.66 -1.1 1,161,757 + RALBFv3_RS05240 0.50 -0.1 1,161,757 + RALBFv3_RS05240 0.50 -1.0 1,161,758 - RALBFv3_RS05240 0.50 +0.7 1,161,907 + RALBFv3_RS05240 0.78 +0.2 1,161,907 + RALBFv3_RS05240 0.78 +0.8 1,161,908 - RALBFv3_RS05240 0.78 +1.1 1,161,908 - RALBFv3_RS05240 0.78 -0.4 1,162,451 + RALBFv3_RS23695 0.63 +0.1 1,162,452 - RALBFv3_RS23695 0.64 +1.6 1,162,807 - RALBFv3_RS05250 0.23 +0.5 1,162,854 + RALBFv3_RS05250 0.30 +0.0 1,162,855 - RALBFv3_RS05250 0.30 -0.1 1,162,858 + RALBFv3_RS05250 0.30 +0.2 1,162,860 + RALBFv3_RS05250 0.31 +0.1 1,162,860 + RALBFv3_RS05250 0.31 +1.3 1,162,860 + RALBFv3_RS05250 0.31 +1.7 1,162,860 + RALBFv3_RS05250 0.31 +0.6 1,162,861 - RALBFv3_RS05250 0.31 -0.9 1,162,861 - RALBFv3_RS05250 0.31 +0.8 1,162,861 - RALBFv3_RS05250 0.31 -0.4 1,162,861 - RALBFv3_RS05250 0.31 +0.1 1,162,861 - RALBFv3_RS05250 0.31 -0.1 1,162,869 + RALBFv3_RS05250 0.32 -0.6 1,162,912 - RALBFv3_RS05250 0.38 -1.6 1,163,049 + RALBFv3_RS05250 0.56 +1.6 1,163,050 - RALBFv3_RS05250 0.56 -0.6 1,163,050 - RALBFv3_RS05250 0.56 -1.6 1,163,089 - RALBFv3_RS05250 0.62 -0.1 1,163,089 - RALBFv3_RS05250 0.62 +0.9 1,163,264 - RALBFv3_RS05250 0.86 -2.9
Or see this region's nucleotide sequence