Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS20515

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS20510 and RALBFv3_RS20515 overlap by 4 nucleotidesRALBFv3_RS20515 and RALBFv3_RS20520 overlap by 4 nucleotidesRALBFv3_RS20520 and RALBFv3_RS20525 overlap by 4 nucleotides RALBFv3_RS20510: RALBFv3_RS20510 - cobalamin biosynthesis protein CbiD, at 1,303,613 to 1,304,764 _RS20510 RALBFv3_RS20515: RALBFv3_RS20515 - precorrin-2 C(20)-methyltransferase, at 1,304,761 to 1,305,492 _RS20515 RALBFv3_RS20520: RALBFv3_RS20520 - precorrin-4 C(11)-methyltransferase, at 1,305,489 to 1,306,325 _RS20520 RALBFv3_RS20525: RALBFv3_RS20525 - cobalamin biosynthesis protein CbiG, at 1,306,322 to 1,307,086 _RS20525 Position (kb) 1304 1305 1306Strain fitness (log2 ratio) -1 0 1at 1303.784 kb on + strand, within RALBFv3_RS20510at 1303.784 kb on + strand, within RALBFv3_RS20510at 1303.784 kb on + strand, within RALBFv3_RS20510at 1303.785 kb on - strand, within RALBFv3_RS20510at 1303.785 kb on - strand, within RALBFv3_RS20510at 1303.787 kb on + strand, within RALBFv3_RS20510at 1303.856 kb on + strand, within RALBFv3_RS20510at 1303.857 kb on - strand, within RALBFv3_RS20510at 1304.231 kb on + strand, within RALBFv3_RS20510at 1304.231 kb on + strand, within RALBFv3_RS20510at 1304.231 kb on + strand, within RALBFv3_RS20510at 1304.231 kb on + strand, within RALBFv3_RS20510at 1304.232 kb on - strand, within RALBFv3_RS20510at 1304.232 kb on - strand, within RALBFv3_RS20510at 1304.578 kb on + strand, within RALBFv3_RS20510at 1304.863 kb on + strand, within RALBFv3_RS20515at 1304.863 kb on + strand, within RALBFv3_RS20515at 1304.995 kb on + strand, within RALBFv3_RS20515at 1304.995 kb on + strand, within RALBFv3_RS20515at 1305.052 kb on + strand, within RALBFv3_RS20515at 1305.079 kb on + strand, within RALBFv3_RS20515at 1305.088 kb on + strand, within RALBFv3_RS20515at 1305.089 kb on - strand, within RALBFv3_RS20515at 1305.095 kb on - strand, within RALBFv3_RS20515at 1305.439 kb on + strandat 1305.499 kb on - strandat 1305.747 kb on + strand, within RALBFv3_RS20520at 1305.747 kb on + strand, within RALBFv3_RS20520at 1306.207 kb on - strand, within RALBFv3_RS20520at 1306.227 kb on - strand, within RALBFv3_RS20520at 1306.406 kb on + strand, within RALBFv3_RS20525at 1306.406 kb on + strand, within RALBFv3_RS20525at 1306.406 kb on + strand, within RALBFv3_RS20525

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,303,784 + RALBFv3_RS20510 0.15 -0.2
1,303,784 + RALBFv3_RS20510 0.15 +1.2
1,303,784 + RALBFv3_RS20510 0.15 -0.3
1,303,785 - RALBFv3_RS20510 0.15 -0.4
1,303,785 - RALBFv3_RS20510 0.15 -0.5
1,303,787 + RALBFv3_RS20510 0.15 +0.8
1,303,856 + RALBFv3_RS20510 0.21 -0.6
1,303,857 - RALBFv3_RS20510 0.21 +0.7
1,304,231 + RALBFv3_RS20510 0.54 +1.5
1,304,231 + RALBFv3_RS20510 0.54 +0.5
1,304,231 + RALBFv3_RS20510 0.54 -0.3
1,304,231 + RALBFv3_RS20510 0.54 +0.1
1,304,232 - RALBFv3_RS20510 0.54 +0.7
1,304,232 - RALBFv3_RS20510 0.54 -0.4
1,304,578 + RALBFv3_RS20510 0.84 +0.8
1,304,863 + RALBFv3_RS20515 0.14 -1.4
1,304,863 + RALBFv3_RS20515 0.14 +0.7
1,304,995 + RALBFv3_RS20515 0.32 +0.6
1,304,995 + RALBFv3_RS20515 0.32 -0.6
1,305,052 + RALBFv3_RS20515 0.40 +0.3
1,305,079 + RALBFv3_RS20515 0.43 -0.4
1,305,088 + RALBFv3_RS20515 0.45 -1.1
1,305,089 - RALBFv3_RS20515 0.45 -1.5
1,305,095 - RALBFv3_RS20515 0.46 +0.2
1,305,439 + -0.6
1,305,499 - -0.9
1,305,747 + RALBFv3_RS20520 0.31 -0.5
1,305,747 + RALBFv3_RS20520 0.31 +0.3
1,306,207 - RALBFv3_RS20520 0.86 -0.2
1,306,227 - RALBFv3_RS20520 0.88 +0.2
1,306,406 + RALBFv3_RS20525 0.11 +0.4
1,306,406 + RALBFv3_RS20525 0.11 -0.7
1,306,406 + RALBFv3_RS20525 0.11 -0.2

Or see this region's nucleotide sequence