Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07360

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS07345 and MMJJ_RS07350 are separated by 13 nucleotidesMMJJ_RS07350 and MMJJ_RS07355 are separated by 44 nucleotidesMMJJ_RS07355 and MMJJ_RS07360 are separated by 15 nucleotidesMMJJ_RS07360 and MMJJ_RS07365 are separated by 17 nucleotidesMMJJ_RS07365 and MMJJ_RS07370 are separated by 15 nucleotides MMJJ_RS07345: MMJJ_RS07345 - homocysteine biosynthesis protein, at 1,349,284 to 1,350,825 _RS07345 MMJJ_RS07350: MMJJ_RS07350 - 4Fe-4S binding protein, at 1,350,839 to 1,351,237 _RS07350 MMJJ_RS07355: MMJJ_RS07355 - MoaD/ThiS family protein, at 1,351,282 to 1,351,536 _RS07355 MMJJ_RS07360: MMJJ_RS07360 - TIGR00269 family protein, at 1,351,552 to 1,352,487 _RS07360 MMJJ_RS07365: MMJJ_RS07365 - CatB-related O-acetyltransferase, at 1,352,505 to 1,353,185 _RS07365 MMJJ_RS07370: MMJJ_RS07370 - tRNA 4-thiouridine(8) synthase ThiI, at 1,353,201 to 1,354,352 _RS07370 Position (kb) 1351 1352 1353Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1350.652 kb on + strand, within MMJJ_RS07345at 1350.655 kb on - strand, within MMJJ_RS07345at 1350.655 kb on - strand, within MMJJ_RS07345at 1350.655 kb on - strand, within MMJJ_RS07345at 1350.655 kb on - strand, within MMJJ_RS07345at 1350.655 kb on - strandat 1350.656 kb on + strand, within MMJJ_RS07345at 1350.656 kb on + strand, within MMJJ_RS07345at 1350.656 kb on + strand, within MMJJ_RS07345at 1350.656 kb on + strand, within MMJJ_RS07345at 1350.657 kb on - strand, within MMJJ_RS07345at 1350.657 kb on - strand, within MMJJ_RS07345at 1350.657 kb on - strand, within MMJJ_RS07345at 1350.658 kb on + strand, within MMJJ_RS07345at 1350.658 kb on + strand, within MMJJ_RS07345at 1350.658 kb on + strand, within MMJJ_RS07345at 1350.658 kb on + strand, within MMJJ_RS07345at 1350.659 kb on - strandat 1350.659 kb on - strand, within MMJJ_RS07345at 1350.660 kb on + strand, within MMJJ_RS07345at 1350.660 kb on + strand, within MMJJ_RS07345at 1350.660 kb on + strand, within MMJJ_RS07345at 1350.660 kb on + strand, within MMJJ_RS07345at 1350.660 kb on + strand, within MMJJ_RS07345at 1350.660 kb on + strand, within MMJJ_RS07345at 1350.662 kb on - strand, within MMJJ_RS07345at 1350.684 kb on - strandat 1350.685 kb on + strandat 1350.784 kb on + strandat 1350.879 kb on - strand, within MMJJ_RS07350at 1350.921 kb on - strand, within MMJJ_RS07350at 1350.927 kb on - strand, within MMJJ_RS07350at 1350.927 kb on - strand, within MMJJ_RS07350at 1350.931 kb on - strand, within MMJJ_RS07350at 1350.932 kb on + strand, within MMJJ_RS07350at 1350.937 kb on + strand, within MMJJ_RS07350at 1351.020 kb on - strand, within MMJJ_RS07350at 1351.200 kb on - strandat 1351.219 kb on - strandat 1351.225 kb on + strandat 1351.236 kb on + strandat 1351.248 kb on + strandat 1351.272 kb on + strandat 1351.289 kb on - strandat 1351.350 kb on + strand, within MMJJ_RS07355at 1351.355 kb on - strand, within MMJJ_RS07355at 1351.409 kb on - strand, within MMJJ_RS07355at 1351.409 kb on - strand, within MMJJ_RS07355at 1351.443 kb on + strand, within MMJJ_RS07355at 1351.443 kb on + strand, within MMJJ_RS07355at 1351.483 kb on + strand, within MMJJ_RS07355at 1351.484 kb on - strand, within MMJJ_RS07355at 1351.484 kb on - strand, within MMJJ_RS07355at 1351.485 kb on + strand, within MMJJ_RS07355at 1351.485 kb on + strand, within MMJJ_RS07355at 1351.485 kb on + strand, within MMJJ_RS07355at 1351.485 kb on + strand, within MMJJ_RS07355at 1351.487 kb on - strand, within MMJJ_RS07355at 1351.487 kb on - strand, within MMJJ_RS07355at 1351.492 kb on + strand, within MMJJ_RS07355at 1351.512 kb on + strandat 1351.514 kb on + strandat 1351.514 kb on + strandat 1351.514 kb on + strandat 1351.541 kb on + strandat 1351.583 kb on - strandat 1351.584 kb on + strandat 1351.585 kb on - strandat 1351.585 kb on - strandat 1351.617 kb on - strandat 1352.086 kb on - strand, within MMJJ_RS07360at 1352.192 kb on - strand, within MMJJ_RS07360at 1352.331 kb on + strand, within MMJJ_RS07360at 1352.425 kb on + strandat 1352.485 kb on - strandat 1352.485 kb on - strandat 1352.493 kb on - strandat 1352.526 kb on - strandat 1352.526 kb on - strandat 1352.527 kb on + strandat 1352.556 kb on + strandat 1352.646 kb on + strand, within MMJJ_RS07365at 1352.673 kb on - strand, within MMJJ_RS07365at 1352.674 kb on + strand, within MMJJ_RS07365at 1352.674 kb on + strand, within MMJJ_RS07365at 1352.674 kb on + strand, within MMJJ_RS07365at 1352.674 kb on + strand, within MMJJ_RS07365at 1352.678 kb on - strand, within MMJJ_RS07365at 1352.678 kb on - strand, within MMJJ_RS07365at 1352.678 kb on - strand, within MMJJ_RS07365at 1352.678 kb on - strand, within MMJJ_RS07365at 1352.678 kb on - strand, within MMJJ_RS07365at 1352.679 kb on + strand, within MMJJ_RS07365at 1352.679 kb on + strand, within MMJJ_RS07365at 1352.680 kb on - strand, within MMJJ_RS07365at 1352.705 kb on - strand, within MMJJ_RS07365at 1352.705 kb on - strand, within MMJJ_RS07365at 1352.706 kb on + strand, within MMJJ_RS07365at 1352.754 kb on + strand, within MMJJ_RS07365at 1352.760 kb on - strand, within MMJJ_RS07365at 1352.761 kb on + strand, within MMJJ_RS07365at 1352.779 kb on + strand, within MMJJ_RS07365at 1352.839 kb on + strand, within MMJJ_RS07365at 1352.863 kb on + strand, within MMJJ_RS07365at 1352.875 kb on - strand, within MMJJ_RS07365at 1352.875 kb on - strand, within MMJJ_RS07365at 1352.876 kb on + strand, within MMJJ_RS07365at 1352.876 kb on + strand, within MMJJ_RS07365at 1352.894 kb on + strand, within MMJJ_RS07365at 1352.919 kb on - strand, within MMJJ_RS07365at 1352.919 kb on - strand, within MMJJ_RS07365at 1352.920 kb on + strand, within MMJJ_RS07365at 1352.920 kb on + strand, within MMJJ_RS07365at 1352.920 kb on + strand, within MMJJ_RS07365at 1352.961 kb on + strand, within MMJJ_RS07365at 1352.964 kb on - strand, within MMJJ_RS07365at 1353.004 kb on - strand, within MMJJ_RS07365at 1353.004 kb on - strand, within MMJJ_RS07365at 1353.011 kb on - strand, within MMJJ_RS07365at 1353.011 kb on - strand, within MMJJ_RS07365at 1353.011 kb on - strand, within MMJJ_RS07365at 1353.011 kb on - strand, within MMJJ_RS07365at 1353.012 kb on + strand, within MMJJ_RS07365at 1353.053 kb on + strand, within MMJJ_RS07365at 1353.056 kb on - strand, within MMJJ_RS07365at 1353.057 kb on + strand, within MMJJ_RS07365at 1353.057 kb on + strand, within MMJJ_RS07365at 1353.057 kb on + strand, within MMJJ_RS07365at 1353.057 kb on + strand, within MMJJ_RS07365at 1353.124 kb on - strandat 1353.149 kb on - strandat 1353.152 kb on - strandat 1353.161 kb on + strandat 1353.176 kb on - strandat 1353.188 kb on - strandat 1353.188 kb on - strandat 1353.188 kb on - strandat 1353.190 kb on - strandat 1353.197 kb on - strandat 1353.197 kb on - strandat 1353.285 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE
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1,350,652 + MMJJ_RS07345 0.89 -0.3
1,350,655 - MMJJ_RS07345 0.89 -1.8
1,350,655 - MMJJ_RS07345 0.89 -2.1
1,350,655 - MMJJ_RS07345 0.89 +0.2
1,350,655 - MMJJ_RS07345 0.89 -1.3
1,350,655 - +0.2
1,350,656 + MMJJ_RS07345 0.89 -0.5
1,350,656 + MMJJ_RS07345 0.89 -1.8
1,350,656 + MMJJ_RS07345 0.89 -1.3
1,350,656 + MMJJ_RS07345 0.89 -1.3
1,350,657 - MMJJ_RS07345 0.89 -1.8
1,350,657 - MMJJ_RS07345 0.89 -2.6
1,350,657 - MMJJ_RS07345 0.89 -0.1
1,350,658 + MMJJ_RS07345 0.89 -2.6
1,350,658 + MMJJ_RS07345 0.89 -1.2
1,350,658 + MMJJ_RS07345 0.89 -4.0
1,350,658 + MMJJ_RS07345 0.89 -3.2
1,350,659 - -1.3
1,350,659 - MMJJ_RS07345 0.89 -1.8
1,350,660 + MMJJ_RS07345 0.89 +0.2
1,350,660 + MMJJ_RS07345 0.89 -3.8
1,350,660 + MMJJ_RS07345 0.89 +0.2
1,350,660 + MMJJ_RS07345 0.89 -0.8
1,350,660 + MMJJ_RS07345 0.89 +0.5
1,350,660 + MMJJ_RS07345 0.89 -1.8
1,350,662 - MMJJ_RS07345 0.89 -0.8
1,350,684 - -2.1
1,350,685 + -1.3
1,350,784 + -2.3
1,350,879 - MMJJ_RS07350 0.10 -3.8
1,350,921 - MMJJ_RS07350 0.21 -2.3
1,350,927 - MMJJ_RS07350 0.22 -2.9
1,350,927 - MMJJ_RS07350 0.22 -1.8
1,350,931 - MMJJ_RS07350 0.23 -2.6
1,350,932 + MMJJ_RS07350 0.23 +0.2
1,350,937 + MMJJ_RS07350 0.25 +0.4
1,351,020 - MMJJ_RS07350 0.45 -1.3
1,351,200 - +0.2
1,351,219 - -3.5
1,351,225 + -0.8
1,351,236 + -1.6
1,351,248 + -3.8
1,351,272 + +0.2
1,351,289 - -2.1
1,351,350 + MMJJ_RS07355 0.27 -2.8
1,351,355 - MMJJ_RS07355 0.29 -0.8
1,351,409 - MMJJ_RS07355 0.50 -4.5
1,351,409 - MMJJ_RS07355 0.50 -3.2
1,351,443 + MMJJ_RS07355 0.63 -2.3
1,351,443 + MMJJ_RS07355 0.63 -4.2
1,351,483 + MMJJ_RS07355 0.79 -1.7
1,351,484 - MMJJ_RS07355 0.79 -0.4
1,351,484 - MMJJ_RS07355 0.79 -2.3
1,351,485 + MMJJ_RS07355 0.80 -2.6
1,351,485 + MMJJ_RS07355 0.80 -0.0
1,351,485 + MMJJ_RS07355 0.80 -1.8
1,351,485 + MMJJ_RS07355 0.80 -1.8
1,351,487 - MMJJ_RS07355 0.80 -2.3
1,351,487 - MMJJ_RS07355 0.80 -2.3
1,351,492 + MMJJ_RS07355 0.82 -0.8
1,351,512 + -3.8
1,351,514 + -4.7
1,351,514 + +0.2
1,351,514 + -1.3
1,351,541 + -0.0
1,351,583 - -1.3
1,351,584 + -2.1
1,351,585 - -1.3
1,351,585 - -2.6
1,351,617 - -2.3
1,352,086 - MMJJ_RS07360 0.57 -1.8
1,352,192 - MMJJ_RS07360 0.68 -0.8
1,352,331 + MMJJ_RS07360 0.83 -2.4
1,352,425 + -1.4
1,352,485 - +1.8
1,352,485 - -0.0
1,352,493 - +1.3
1,352,526 - -2.6
1,352,526 - +1.4
1,352,527 + -0.2
1,352,556 + -1.4
1,352,646 + MMJJ_RS07365 0.21 +0.8
1,352,673 - MMJJ_RS07365 0.25 -0.2
1,352,674 + MMJJ_RS07365 0.25 -1.7
1,352,674 + MMJJ_RS07365 0.25 -3.2
1,352,674 + MMJJ_RS07365 0.25 -1.7
1,352,674 + MMJJ_RS07365 0.25 +1.0
1,352,678 - MMJJ_RS07365 0.25 +1.4
1,352,678 - MMJJ_RS07365 0.25 +1.8
1,352,678 - MMJJ_RS07365 0.25 -1.5
1,352,678 - MMJJ_RS07365 0.25 +1.7
1,352,678 - MMJJ_RS07365 0.25 -0.1
1,352,679 + MMJJ_RS07365 0.26 +2.1
1,352,679 + MMJJ_RS07365 0.26 +1.1
1,352,680 - MMJJ_RS07365 0.26 -1.5
1,352,705 - MMJJ_RS07365 0.29 +1.3
1,352,705 - MMJJ_RS07365 0.29 +0.4
1,352,706 + MMJJ_RS07365 0.30 +0.0
1,352,754 + MMJJ_RS07365 0.37 +1.3
1,352,760 - MMJJ_RS07365 0.37 +0.2
1,352,761 + MMJJ_RS07365 0.38 +1.8
1,352,779 + MMJJ_RS07365 0.40 +1.2
1,352,839 + MMJJ_RS07365 0.49 -2.8
1,352,863 + MMJJ_RS07365 0.53 +1.2
1,352,875 - MMJJ_RS07365 0.54 +1.2
1,352,875 - MMJJ_RS07365 0.54 -2.2
1,352,876 + MMJJ_RS07365 0.54 -2.4
1,352,876 + MMJJ_RS07365 0.54 -2.9
1,352,894 + MMJJ_RS07365 0.57 -1.7
1,352,919 - MMJJ_RS07365 0.61 +1.2
1,352,919 - MMJJ_RS07365 0.61 -1.0
1,352,920 + MMJJ_RS07365 0.61 +1.0
1,352,920 + MMJJ_RS07365 0.61 -3.1
1,352,920 + MMJJ_RS07365 0.61 -2.2
1,352,961 + MMJJ_RS07365 0.67 +0.9
1,352,964 - MMJJ_RS07365 0.67 +1.1
1,353,004 - MMJJ_RS07365 0.73 +0.6
1,353,004 - MMJJ_RS07365 0.73 +2.1
1,353,011 - MMJJ_RS07365 0.74 +2.0
1,353,011 - MMJJ_RS07365 0.74 -1.6
1,353,011 - MMJJ_RS07365 0.74 +1.2
1,353,011 - MMJJ_RS07365 0.74 +1.1
1,353,012 + MMJJ_RS07365 0.74 -1.4
1,353,053 + MMJJ_RS07365 0.80 +1.4
1,353,056 - MMJJ_RS07365 0.81 +0.9
1,353,057 + MMJJ_RS07365 0.81 -2.2
1,353,057 + MMJJ_RS07365 0.81 -2.0
1,353,057 + MMJJ_RS07365 0.81 -1.5
1,353,057 + MMJJ_RS07365 0.81 +0.7
1,353,124 - -2.1
1,353,149 - +1.8
1,353,152 - +0.7
1,353,161 + -0.4
1,353,176 - +1.7
1,353,188 - +0.9
1,353,188 - +1.5
1,353,188 - -0.7
1,353,190 - -0.8
1,353,197 - +1.2
1,353,197 - -0.2
1,353,285 - +0.2

Or see this region's nucleotide sequence