Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16075 and HMPREF1058_RS16070 are separated by 4 nucleotides HMPREF1058_RS16070 and HMPREF1058_RS16065 are separated by 2 nucleotides HMPREF1058_RS16065 and HMPREF1058_RS16060 are separated by 287 nucleotides HMPREF1058_RS16060 and HMPREF1058_RS16055 are separated by 21 nucleotides
HMPREF1058_RS16075: HMPREF1058_RS16075 - hypothetical protein, at 766,300 to 767,286
_RS16075
HMPREF1058_RS16070: HMPREF1058_RS16070 - helix-turn-helix transcriptional regulator, at 767,291 to 767,578
_RS16070
HMPREF1058_RS16065: HMPREF1058_RS16065 - DUF1016 family protein, at 767,581 to 768,639
_RS16065
HMPREF1058_RS16060: HMPREF1058_RS16060 - 5S ribosomal RNA, at 768,927 to 769,035
_RS16060
HMPREF1058_RS16055: HMPREF1058_RS16055 - AAA family ATPase, at 769,057 to 770,673
_RS16055
Position (kb) 767
768
769 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 766.665 kb on + strand, within HMPREF1058_RS16075 at 766.666 kb on - strand, within HMPREF1058_RS16075 at 766.676 kb on + strand, within HMPREF1058_RS16075 at 766.811 kb on - strand, within HMPREF1058_RS16075 at 766.960 kb on - strand, within HMPREF1058_RS16075 at 767.043 kb on - strand, within HMPREF1058_RS16075 at 767.043 kb on - strand, within HMPREF1058_RS16075 at 767.048 kb on + strand, within HMPREF1058_RS16075 at 767.049 kb on - strand, within HMPREF1058_RS16075 at 767.101 kb on + strand, within HMPREF1058_RS16075 at 767.131 kb on + strand, within HMPREF1058_RS16075 at 767.159 kb on - strand, within HMPREF1058_RS16075 at 767.195 kb on + strand at 767.195 kb on + strand at 767.196 kb on - strand at 767.422 kb on - strand, within HMPREF1058_RS16070 at 767.453 kb on - strand, within HMPREF1058_RS16070 at 767.498 kb on + strand, within HMPREF1058_RS16070 at 767.498 kb on + strand, within HMPREF1058_RS16070 at 767.508 kb on - strand, within HMPREF1058_RS16070 at 767.563 kb on + strand at 767.573 kb on + strand at 767.582 kb on + strand at 767.583 kb on - strand at 767.702 kb on + strand, within HMPREF1058_RS16065 at 767.713 kb on + strand, within HMPREF1058_RS16065 at 767.713 kb on + strand, within HMPREF1058_RS16065 at 767.737 kb on + strand, within HMPREF1058_RS16065 at 767.882 kb on + strand, within HMPREF1058_RS16065 at 767.883 kb on - strand, within HMPREF1058_RS16065 at 767.924 kb on - strand, within HMPREF1058_RS16065 at 767.931 kb on - strand, within HMPREF1058_RS16065 at 768.048 kb on + strand, within HMPREF1058_RS16065 at 768.188 kb on - strand, within HMPREF1058_RS16065 at 768.231 kb on - strand, within HMPREF1058_RS16065 at 768.336 kb on + strand, within HMPREF1058_RS16065 at 768.336 kb on + strand, within HMPREF1058_RS16065 at 768.425 kb on + strand, within HMPREF1058_RS16065 at 768.465 kb on + strand, within HMPREF1058_RS16065 at 768.515 kb on + strand, within HMPREF1058_RS16065 at 768.555 kb on + strand at 768.576 kb on - strand at 768.635 kb on - strand at 768.691 kb on - strand at 768.725 kb on + strand at 768.755 kb on + strand at 768.941 kb on + strand, within HMPREF1058_RS16060 at 768.942 kb on - strand, within HMPREF1058_RS16060 at 768.942 kb on - strand, within HMPREF1058_RS16060 at 769.003 kb on - strand, within HMPREF1058_RS16060 at 769.025 kb on + strand at 769.025 kb on + strand at 769.025 kb on + strand at 769.033 kb on + strand at 769.040 kb on - strand at 769.180 kb on - strand at 769.194 kb on + strand at 769.195 kb on - strand at 769.198 kb on + strand at 769.204 kb on + strand at 769.204 kb on + strand at 769.258 kb on + strand, within HMPREF1058_RS16055 at 769.266 kb on + strand, within HMPREF1058_RS16055 at 769.267 kb on - strand, within HMPREF1058_RS16055 at 769.351 kb on - strand, within HMPREF1058_RS16055 at 769.351 kb on - strand, within HMPREF1058_RS16055 at 769.475 kb on - strand, within HMPREF1058_RS16055 at 769.527 kb on + strand, within HMPREF1058_RS16055 at 769.528 kb on - strand, within HMPREF1058_RS16055 at 769.549 kb on + strand, within HMPREF1058_RS16055
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) remove 766,665 + HMPREF1058_RS16075 0.37 +0.7 766,666 - HMPREF1058_RS16075 0.37 -1.6 766,676 + HMPREF1058_RS16075 0.38 -0.5 766,811 - HMPREF1058_RS16075 0.52 +0.0 766,960 - HMPREF1058_RS16075 0.67 -1.2 767,043 - HMPREF1058_RS16075 0.75 +0.7 767,043 - HMPREF1058_RS16075 0.75 -0.1 767,048 + HMPREF1058_RS16075 0.76 +0.1 767,049 - HMPREF1058_RS16075 0.76 -0.5 767,101 + HMPREF1058_RS16075 0.81 -0.4 767,131 + HMPREF1058_RS16075 0.84 -2.3 767,159 - HMPREF1058_RS16075 0.87 +0.2 767,195 + +0.6 767,195 + -0.0 767,196 - -0.2 767,422 - HMPREF1058_RS16070 0.45 -1.7 767,453 - HMPREF1058_RS16070 0.56 -3.5 767,498 + HMPREF1058_RS16070 0.72 -1.6 767,498 + HMPREF1058_RS16070 0.72 -2.4 767,508 - HMPREF1058_RS16070 0.75 -1.7 767,563 + +0.4 767,573 + -2.1 767,582 + -1.3 767,583 - -1.7 767,702 + HMPREF1058_RS16065 0.11 -0.5 767,713 + HMPREF1058_RS16065 0.12 -1.7 767,713 + HMPREF1058_RS16065 0.12 -1.7 767,737 + HMPREF1058_RS16065 0.15 -0.2 767,882 + HMPREF1058_RS16065 0.28 +0.1 767,883 - HMPREF1058_RS16065 0.29 +0.9 767,924 - HMPREF1058_RS16065 0.32 +1.1 767,931 - HMPREF1058_RS16065 0.33 +0.2 768,048 + HMPREF1058_RS16065 0.44 -0.8 768,188 - HMPREF1058_RS16065 0.57 +1.1 768,231 - HMPREF1058_RS16065 0.61 -1.0 768,336 + HMPREF1058_RS16065 0.71 -1.5 768,336 + HMPREF1058_RS16065 0.71 -2.2 768,425 + HMPREF1058_RS16065 0.80 -2.6 768,465 + HMPREF1058_RS16065 0.83 -0.2 768,515 + HMPREF1058_RS16065 0.88 -1.8 768,555 + -2.0 768,576 - +1.0 768,635 - -0.9 768,691 - -0.4 768,725 + -2.8 768,755 + -1.5 768,941 + HMPREF1058_RS16060 0.13 -1.7 768,942 - HMPREF1058_RS16060 0.14 +0.1 768,942 - HMPREF1058_RS16060 0.14 -0.7 769,003 - HMPREF1058_RS16060 0.70 +1.3 769,025 + -1.5 769,025 + -0.6 769,025 + -1.3 769,033 + -0.5 769,040 - -0.8 769,180 - +1.6 769,194 + -0.3 769,195 - +1.8 769,198 + -0.3 769,204 + -0.9 769,204 + -0.6 769,258 + HMPREF1058_RS16055 0.12 -0.1 769,266 + HMPREF1058_RS16055 0.13 +0.1 769,267 - HMPREF1058_RS16055 0.13 +0.3 769,351 - HMPREF1058_RS16055 0.18 +0.4 769,351 - HMPREF1058_RS16055 0.18 +1.7 769,475 - HMPREF1058_RS16055 0.26 -0.5 769,527 + HMPREF1058_RS16055 0.29 -0.4 769,528 - HMPREF1058_RS16055 0.29 -0.1 769,549 + HMPREF1058_RS16055 0.30 +1.2
Or see this region's nucleotide sequence