Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08860

Experiment: Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)
1,011,414	+		HMPREF1058_RS08865	0.29	-1.6
1,011,414	+		HMPREF1058_RS08865	0.29	-0.5
1,011,473	-		HMPREF1058_RS08865	0.34	-1.1
1,011,592	-		HMPREF1058_RS08865	0.43	-0.3
1,011,598	+		HMPREF1058_RS08865	0.44	-1.2
1,011,654	-		HMPREF1058_RS08865	0.48	-1.1
1,011,654	-		HMPREF1058_RS08865	0.48	-0.3
1,011,655	+		HMPREF1058_RS08865	0.48	-0.8
1,012,044	+		HMPREF1058_RS08865	0.79	-3.4
1,012,044	+		HMPREF1058_RS08865	0.79	-1.1
1,012,045	-		HMPREF1058_RS08865	0.79	+1.7
1,012,046	+		HMPREF1058_RS08865	0.79	+0.3
1,012,046	+		HMPREF1058_RS08865	0.79	-0.8
1,012,047	-		HMPREF1058_RS08865	0.79	-2.3
1,012,048	+		HMPREF1058_RS08865	0.79	+0.6
1,012,048	+		HMPREF1058_RS08865	0.79	-0.6
1,012,049	-		HMPREF1058_RS08865	0.79	+0.5
1,012,049	-		HMPREF1058_RS08865	0.79	-0.7
1,012,049	-		HMPREF1058_RS08865	0.79	+0.2
1,012,049	-		HMPREF1058_RS08865	0.79	-1.6
1,012,113	-		HMPREF1058_RS08865	0.84	-0.8
1,012,286	+				-1.5
1,012,311	-				+0.2
1,012,346	-				+2.1
1,012,353	-				-1.2
1,012,382	+				-0.7
1,012,383	-				-0.3
1,012,449	+				+0.7
1,012,461	-				-0.7
1,012,551	+		HMPREF1058_RS08860	0.14	-0.5
1,012,655	-		HMPREF1058_RS08860	0.21	-0.3
1,012,728	+		HMPREF1058_RS08860	0.26	-1.0
1,013,001	+		HMPREF1058_RS08860	0.44	+0.3
1,013,002	-		HMPREF1058_RS08860	0.44	+1.9
1,013,004	-		HMPREF1058_RS08860	0.44	-1.0
1,013,334	-		HMPREF1058_RS08860	0.67	-1.7
1,013,354	+		HMPREF1058_RS08860	0.68	-2.0
1,013,367	-		HMPREF1058_RS08860	0.69	-1.5
1,013,463	+		HMPREF1058_RS08860	0.75	+2.3
1,013,481	-		HMPREF1058_RS08860	0.77	-1.4
1,013,486	+		HMPREF1058_RS08860	0.77	-1.3
1,013,533	+		HMPREF1058_RS08860	0.80	-0.1
1,013,548	-		HMPREF1058_RS08860	0.81	-1.6
1,013,617	-		HMPREF1058_RS08860	0.86	-1.0
1,013,652	-		HMPREF1058_RS08860	0.88	-0.3
1,013,662	+		HMPREF1058_RS08860	0.89	-0.7
1,013,662	+		HMPREF1058_RS08860	0.89	-1.1
1,013,703	+				-1.7
1,013,708	+				-0.7
1,013,766	+				-1.8
1,013,766	+				-0.4
1,013,766	+				+2.3
1,013,767	-				+1.0
1,013,775	-				-2.0
1,013,812	+				-0.7
1,013,851	+				-2.3
1,013,907	+				-0.7
1,013,908	-				+0.1
1,013,909	+				-1.1
1,013,928	+				-0.9
1,013,928	+				-1.3
1,013,944	+				-1.2
1,013,961	+				+0.6
1,014,079	+				-0.2
1,014,080	-				-6.0
1,014,080	-				-2.8
1,014,081	+				-1.3
1,014,191	-		HMPREF1058_RS08855	0.12	-3.3
1,014,252	-		HMPREF1058_RS08855	0.25	-0.9
1,014,317	-		HMPREF1058_RS08855	0.39	-4.2
1,014,318	+		HMPREF1058_RS08855	0.39	-0.3
1,014,318	+		HMPREF1058_RS08855	0.39	-2.4
1,014,318	+		HMPREF1058_RS08855	0.39	-2.8
1,014,319	-		HMPREF1058_RS08855	0.39	-2.7
1,014,323	-		HMPREF1058_RS08855	0.40	-4.1
1,014,323	-		HMPREF1058_RS08855	0.40	-4.4
1,014,335	+		HMPREF1058_RS08855	0.43	-1.9
1,014,343	-		HMPREF1058_RS08855	0.44	-4.5
1,014,343	-		HMPREF1058_RS08855	0.44	-4.5
1,014,343	-		HMPREF1058_RS08855	0.44	-0.3
1,014,431	-		HMPREF1058_RS08855	0.63	-4.5
1,014,468	+		HMPREF1058_RS08855	0.70	-2.4
1,014,510	-		HMPREF1058_RS08855	0.79	-4.0
1,014,510	-		HMPREF1058_RS08855	0.79	-3.3
1,014,527	+		HMPREF1058_RS08855	0.83	-2.8
1,014,528	-		HMPREF1058_RS08855	0.83	-4.7
1,014,528	-		HMPREF1058_RS08855	0.83	-3.0
1,014,593	-				-2.7
1,014,602	-				-2.1
1,014,606	+				-1.3
1,014,612	-				-2.1
1,014,616	+				-1.7
1,014,616	+				-1.6
1,014,617	-				-0.7
1,014,702	+		HMPREF1058_RS08850	0.13	-3.9
1,014,703	-		HMPREF1058_RS08850	0.13	-3.5
1,014,761	-		HMPREF1058_RS08850	0.23	-4.1