Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05959

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05958 and H281DRAFT_05959 are separated by 45 nucleotidesH281DRAFT_05959 and H281DRAFT_05960 are separated by 73 nucleotides H281DRAFT_05958: H281DRAFT_05958 - Outer membrane protein (porin), at 99,074 to 100,225 _05958 H281DRAFT_05959: H281DRAFT_05959 - Sugar phosphate permease, at 100,271 to 101,650 _05959 H281DRAFT_05960: H281DRAFT_05960 - gluconolactonase (EC 3.1.1.17), at 101,724 to 102,653 _05960 Position (kb) 100 101 102Strain fitness (log2 ratio) -2 -1 0 1 2at 99.321 kb on + strand, within H281DRAFT_05958at 99.321 kb on + strand, within H281DRAFT_05958at 99.321 kb on + strand, within H281DRAFT_05958at 99.427 kb on - strand, within H281DRAFT_05958at 99.564 kb on + strand, within H281DRAFT_05958at 99.789 kb on + strand, within H281DRAFT_05958at 100.647 kb on + strand, within H281DRAFT_05959at 101.196 kb on + strand, within H281DRAFT_05959at 101.488 kb on - strand, within H281DRAFT_05959at 101.499 kb on + strand, within H281DRAFT_05959at 101.566 kb on - strandat 101.566 kb on - strandat 101.687 kb on + strandat 101.688 kb on - strandat 101.688 kb on - strandat 101.996 kb on - strand, within H281DRAFT_05960at 102.179 kb on - strand, within H281DRAFT_05960at 102.412 kb on + strand, within H281DRAFT_05960at 102.413 kb on - strand, within H281DRAFT_05960at 102.491 kb on - strand, within H281DRAFT_05960at 102.646 kb on + strandat 102.646 kb on + strandat 102.647 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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99,321 + H281DRAFT_05958 0.21 -0.3
99,321 + H281DRAFT_05958 0.21 +0.7
99,321 + H281DRAFT_05958 0.21 +0.3
99,427 - H281DRAFT_05958 0.31 -1.5
99,564 + H281DRAFT_05958 0.43 -0.1
99,789 + H281DRAFT_05958 0.62 +0.6
100,647 + H281DRAFT_05959 0.27 -0.3
101,196 + H281DRAFT_05959 0.67 -0.2
101,488 - H281DRAFT_05959 0.88 -0.5
101,499 + H281DRAFT_05959 0.89 -0.4
101,566 - +0.3
101,566 - +0.3
101,687 + -1.9
101,688 - -0.2
101,688 - -1.0
101,996 - H281DRAFT_05960 0.29 +0.3
102,179 - H281DRAFT_05960 0.49 +0.5
102,412 + H281DRAFT_05960 0.74 +0.6
102,413 - H281DRAFT_05960 0.74 +2.1
102,491 - H281DRAFT_05960 0.82 -0.7
102,646 + +0.3
102,646 + -0.0
102,647 - +0.1

Or see this region's nucleotide sequence