Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04634

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04632 and H281DRAFT_04633 are separated by 102 nucleotidesH281DRAFT_04633 and H281DRAFT_04634 are separated by 309 nucleotidesH281DRAFT_04634 and H281DRAFT_04635 are separated by 60 nucleotidesH281DRAFT_04635 and H281DRAFT_04636 are separated by 9 nucleotides H281DRAFT_04632: H281DRAFT_04632 - LysR family transcriptional regulator, glycine cleavage system transcriptional activator, at 30,527 to 31,447 _04632 H281DRAFT_04633: H281DRAFT_04633 - (3S)-malyl-CoA thioesterase, at 31,550 to 31,945 _04633 H281DRAFT_04634: H281DRAFT_04634 - ATP-binding cassette, subfamily B, at 32,255 to 34,144 _04634 H281DRAFT_04635: H281DRAFT_04635 - Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon), at 34,205 to 34,912 _04635 H281DRAFT_04636: H281DRAFT_04636 - hypothetical protein, at 34,922 to 36,034 _04636 Position (kb) 32 33 34 35Strain fitness (log2 ratio) -2 -1 0 1at 31.316 kb on + strand, within H281DRAFT_04632at 31.329 kb on - strand, within H281DRAFT_04632at 31.392 kb on + strandat 31.392 kb on + strandat 31.393 kb on - strandat 31.412 kb on + strandat 31.413 kb on - strandat 31.413 kb on - strandat 31.476 kb on + strandat 31.476 kb on + strandat 31.477 kb on - strandat 31.477 kb on - strandat 31.487 kb on + strandat 31.488 kb on - strandat 31.498 kb on + strandat 31.498 kb on + strandat 31.499 kb on - strandat 31.499 kb on - strandat 31.507 kb on + strandat 31.602 kb on + strand, within H281DRAFT_04633at 31.602 kb on + strand, within H281DRAFT_04633at 31.602 kb on + strand, within H281DRAFT_04633at 31.602 kb on + strand, within H281DRAFT_04633at 31.603 kb on - strand, within H281DRAFT_04633at 31.622 kb on + strand, within H281DRAFT_04633at 31.651 kb on + strand, within H281DRAFT_04633at 31.651 kb on + strand, within H281DRAFT_04633at 31.651 kb on + strand, within H281DRAFT_04633at 31.662 kb on + strand, within H281DRAFT_04633at 31.662 kb on + strand, within H281DRAFT_04633at 31.663 kb on - strand, within H281DRAFT_04633at 31.691 kb on - strand, within H281DRAFT_04633at 31.829 kb on - strand, within H281DRAFT_04633at 31.937 kb on - strandat 31.937 kb on - strandat 32.007 kb on - strandat 32.126 kb on + strandat 32.127 kb on - strandat 32.339 kb on + strandat 32.339 kb on + strandat 32.351 kb on + strandat 32.351 kb on + strandat 32.352 kb on - strandat 32.352 kb on - strandat 32.434 kb on + strandat 32.434 kb on + strandat 32.435 kb on - strandat 32.435 kb on - strandat 32.435 kb on - strandat 32.560 kb on + strand, within H281DRAFT_04634at 32.561 kb on - strand, within H281DRAFT_04634at 32.820 kb on - strand, within H281DRAFT_04634at 32.820 kb on - strand, within H281DRAFT_04634at 32.828 kb on + strand, within H281DRAFT_04634at 32.828 kb on + strand, within H281DRAFT_04634at 32.828 kb on + strand, within H281DRAFT_04634at 32.828 kb on + strand, within H281DRAFT_04634at 32.828 kb on + strand, within H281DRAFT_04634at 32.864 kb on + strandat 32.865 kb on - strand, within H281DRAFT_04634at 32.865 kb on - strand, within H281DRAFT_04634at 32.972 kb on + strand, within H281DRAFT_04634at 32.972 kb on + strand, within H281DRAFT_04634at 32.972 kb on + strand, within H281DRAFT_04634at 32.973 kb on - strand, within H281DRAFT_04634at 32.973 kb on - strand, within H281DRAFT_04634at 32.973 kb on - strand, within H281DRAFT_04634at 33.215 kb on + strand, within H281DRAFT_04634at 33.215 kb on + strand, within H281DRAFT_04634at 33.217 kb on + strand, within H281DRAFT_04634at 33.218 kb on - strand, within H281DRAFT_04634at 33.218 kb on - strand, within H281DRAFT_04634at 33.389 kb on + strand, within H281DRAFT_04634at 33.427 kb on + strand, within H281DRAFT_04634at 33.512 kb on + strand, within H281DRAFT_04634at 33.544 kb on + strand, within H281DRAFT_04634at 33.547 kb on + strand, within H281DRAFT_04634at 33.644 kb on + strand, within H281DRAFT_04634at 33.647 kb on + strand, within H281DRAFT_04634at 33.647 kb on + strand, within H281DRAFT_04634at 33.647 kb on + strand, within H281DRAFT_04634at 33.647 kb on + strandat 33.648 kb on - strand, within H281DRAFT_04634at 33.749 kb on + strand, within H281DRAFT_04634at 33.750 kb on - strand, within H281DRAFT_04634at 34.278 kb on + strandat 34.278 kb on + strand, within H281DRAFT_04635at 34.323 kb on + strand, within H281DRAFT_04635at 34.932 kb on + strandat 35.108 kb on - strand, within H281DRAFT_04636at 35.108 kb on - strand, within H281DRAFT_04636at 35.143 kb on - strand, within H281DRAFT_04636

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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31,316 + H281DRAFT_04632 0.86 +0.4
31,329 - H281DRAFT_04632 0.87 -0.7
31,392 + -0.5
31,392 + +0.5
31,393 - +1.1
31,412 + +0.3
31,413 - -0.6
31,413 - -0.5
31,476 + +1.1
31,476 + +0.1
31,477 - +0.2
31,477 - +0.2
31,487 + -0.3
31,488 - +0.2
31,498 + +0.2
31,498 + +0.1
31,499 - -0.2
31,499 - -0.9
31,507 + -0.5
31,602 + H281DRAFT_04633 0.13 -0.7
31,602 + H281DRAFT_04633 0.13 +0.4
31,602 + H281DRAFT_04633 0.13 +0.1
31,602 + H281DRAFT_04633 0.13 +0.5
31,603 - H281DRAFT_04633 0.13 +0.6
31,622 + H281DRAFT_04633 0.18 -0.4
31,651 + H281DRAFT_04633 0.26 -0.7
31,651 + H281DRAFT_04633 0.26 -0.1
31,651 + H281DRAFT_04633 0.26 +0.1
31,662 + H281DRAFT_04633 0.28 +0.3
31,662 + H281DRAFT_04633 0.28 -0.2
31,663 - H281DRAFT_04633 0.29 -0.1
31,691 - H281DRAFT_04633 0.36 -0.3
31,829 - H281DRAFT_04633 0.70 +0.1
31,937 - +0.1
31,937 - +0.2
32,007 - +0.1
32,126 + +0.7
32,127 - +0.1
32,339 + +0.5
32,339 + +0.7
32,351 + +1.6
32,351 + +0.7
32,352 - -0.1
32,352 - +0.6
32,434 + -0.2
32,434 + -0.5
32,435 - -0.1
32,435 - +0.0
32,435 - +1.2
32,560 + H281DRAFT_04634 0.16 -0.3
32,561 - H281DRAFT_04634 0.16 +0.5
32,820 - H281DRAFT_04634 0.30 +0.5
32,820 - H281DRAFT_04634 0.30 +0.9
32,828 + H281DRAFT_04634 0.30 +0.1
32,828 + H281DRAFT_04634 0.30 +0.7
32,828 + H281DRAFT_04634 0.30 +0.3
32,828 + H281DRAFT_04634 0.30 -1.2
32,828 + H281DRAFT_04634 0.30 +0.1
32,864 + +1.7
32,865 - H281DRAFT_04634 0.32 -0.6
32,865 - H281DRAFT_04634 0.32 -0.4
32,972 + H281DRAFT_04634 0.38 -2.5
32,972 + H281DRAFT_04634 0.38 -0.2
32,972 + H281DRAFT_04634 0.38 +0.1
32,973 - H281DRAFT_04634 0.38 -0.2
32,973 - H281DRAFT_04634 0.38 -0.3
32,973 - H281DRAFT_04634 0.38 -0.1
33,215 + H281DRAFT_04634 0.51 -1.5
33,215 + H281DRAFT_04634 0.51 -0.6
33,217 + H281DRAFT_04634 0.51 -0.8
33,218 - H281DRAFT_04634 0.51 -0.1
33,218 - H281DRAFT_04634 0.51 +0.7
33,389 + H281DRAFT_04634 0.60 -0.4
33,427 + H281DRAFT_04634 0.62 +0.1
33,512 + H281DRAFT_04634 0.67 +0.2
33,544 + H281DRAFT_04634 0.68 +0.5
33,547 + H281DRAFT_04634 0.68 +0.4
33,644 + H281DRAFT_04634 0.73 -0.6
33,647 + H281DRAFT_04634 0.74 +0.0
33,647 + H281DRAFT_04634 0.74 -0.6
33,647 + H281DRAFT_04634 0.74 +0.0
33,647 + +1.1
33,648 - H281DRAFT_04634 0.74 +0.3
33,749 + H281DRAFT_04634 0.79 -1.8
33,750 - H281DRAFT_04634 0.79 +0.8
34,278 + -0.5
34,278 + H281DRAFT_04635 0.10 -2.6
34,323 + H281DRAFT_04635 0.17 -1.8
34,932 + +1.1
35,108 - H281DRAFT_04636 0.17 +1.6
35,108 - H281DRAFT_04636 0.17 +1.0
35,143 - H281DRAFT_04636 0.20 +1.3

Or see this region's nucleotide sequence