Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04623 and H281DRAFT_04624 are separated by 117 nucleotides H281DRAFT_04624 and H281DRAFT_04625 are separated by 115 nucleotides
H281DRAFT_04623: H281DRAFT_04623 - transcriptional regulator, TetR family, at 17,686 to 18,285
_04623
H281DRAFT_04624: H281DRAFT_04624 - hypothetical protein, at 18,403 to 20,190
_04624
H281DRAFT_04625: H281DRAFT_04625 - 3-hydroxyacyl-CoA dehydrogenase, at 20,306 to 22,741
_04625
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.435 kb on + strand at 17.583 kb on - strand at 17.599 kb on + strand at 17.599 kb on + strand at 17.599 kb on + strand at 17.600 kb on - strand at 17.600 kb on - strand at 17.669 kb on + strand at 17.669 kb on + strand at 17.669 kb on + strand at 17.670 kb on - strand at 17.670 kb on - strand at 17.670 kb on - strand at 17.670 kb on - strand at 17.670 kb on - strand at 17.677 kb on + strand at 17.866 kb on + strand, within H281DRAFT_04623 at 17.866 kb on + strand, within H281DRAFT_04623 at 17.866 kb on + strand, within H281DRAFT_04623 at 17.867 kb on - strand, within H281DRAFT_04623 at 17.867 kb on - strand, within H281DRAFT_04623 at 17.995 kb on + strand, within H281DRAFT_04623 at 17.996 kb on - strand, within H281DRAFT_04623 at 18.017 kb on - strand, within H281DRAFT_04623 at 18.413 kb on - strand at 18.604 kb on + strand, within H281DRAFT_04624 at 18.604 kb on + strand, within H281DRAFT_04624 at 18.604 kb on + strand, within H281DRAFT_04624 at 18.605 kb on - strand, within H281DRAFT_04624 at 18.653 kb on - strand, within H281DRAFT_04624 at 18.653 kb on - strand, within H281DRAFT_04624 at 18.661 kb on + strand, within H281DRAFT_04624 at 18.661 kb on + strand, within H281DRAFT_04624 at 18.661 kb on + strand, within H281DRAFT_04624 at 18.745 kb on + strand, within H281DRAFT_04624 at 18.746 kb on - strand, within H281DRAFT_04624 at 18.785 kb on - strand, within H281DRAFT_04624 at 18.785 kb on - strand, within H281DRAFT_04624 at 18.878 kb on + strand, within H281DRAFT_04624 at 18.879 kb on - strand, within H281DRAFT_04624 at 18.970 kb on + strand, within H281DRAFT_04624 at 19.214 kb on + strand, within H281DRAFT_04624 at 19.214 kb on + strand, within H281DRAFT_04624 at 19.215 kb on - strand, within H281DRAFT_04624 at 19.337 kb on - strand, within H281DRAFT_04624 at 19.472 kb on - strand, within H281DRAFT_04624 at 19.472 kb on - strand, within H281DRAFT_04624 at 19.498 kb on + strand, within H281DRAFT_04624 at 19.499 kb on - strand, within H281DRAFT_04624 at 19.651 kb on + strand, within H281DRAFT_04624 at 19.651 kb on + strand, within H281DRAFT_04624 at 19.652 kb on - strand, within H281DRAFT_04624 at 19.693 kb on + strand, within H281DRAFT_04624 at 19.694 kb on - strand, within H281DRAFT_04624 at 19.723 kb on + strand, within H281DRAFT_04624 at 19.724 kb on - strand, within H281DRAFT_04624 at 19.724 kb on - strand, within H281DRAFT_04624 at 19.724 kb on - strand, within H281DRAFT_04624 at 19.724 kb on - strand, within H281DRAFT_04624 at 19.972 kb on + strand, within H281DRAFT_04624 at 19.973 kb on - strand, within H281DRAFT_04624 at 20.005 kb on + strand, within H281DRAFT_04624 at 20.005 kb on + strand, within H281DRAFT_04624 at 20.006 kb on - strand at 20.095 kb on + strand at 20.096 kb on - strand at 20.096 kb on - strand at 20.189 kb on + strand at 20.286 kb on + strand at 20.516 kb on + strand at 20.517 kb on - strand at 20.517 kb on - strand at 20.517 kb on - strand at 20.534 kb on + strand at 20.618 kb on + strand, within H281DRAFT_04625 at 20.618 kb on + strand, within H281DRAFT_04625 at 20.619 kb on - strand, within H281DRAFT_04625 at 20.762 kb on + strand, within H281DRAFT_04625 at 20.763 kb on - strand, within H281DRAFT_04625 at 20.763 kb on - strand, within H281DRAFT_04625 at 21.179 kb on + strand, within H281DRAFT_04625
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 17,435 + +0.9 17,583 - +0.0 17,599 + +0.1 17,599 + -0.4 17,599 + -0.9 17,600 - +0.2 17,600 - -0.1 17,669 + -0.0 17,669 + -0.6 17,669 + -0.7 17,670 - +1.1 17,670 - +0.4 17,670 - -0.6 17,670 - +0.2 17,670 - +0.2 17,677 + +0.9 17,866 + H281DRAFT_04623 0.30 -0.6 17,866 + H281DRAFT_04623 0.30 -1.1 17,866 + H281DRAFT_04623 0.30 -1.1 17,867 - H281DRAFT_04623 0.30 -2.7 17,867 - H281DRAFT_04623 0.30 -2.3 17,995 + H281DRAFT_04623 0.52 -1.5 17,996 - H281DRAFT_04623 0.52 -1.9 18,017 - H281DRAFT_04623 0.55 -1.3 18,413 - +0.2 18,604 + H281DRAFT_04624 0.11 +0.1 18,604 + H281DRAFT_04624 0.11 +0.6 18,604 + H281DRAFT_04624 0.11 -0.2 18,605 - H281DRAFT_04624 0.11 +1.2 18,653 - H281DRAFT_04624 0.14 -0.2 18,653 - H281DRAFT_04624 0.14 +1.1 18,661 + H281DRAFT_04624 0.14 +0.5 18,661 + H281DRAFT_04624 0.14 -0.3 18,661 + H281DRAFT_04624 0.14 +0.7 18,745 + H281DRAFT_04624 0.19 +0.3 18,746 - H281DRAFT_04624 0.19 +0.4 18,785 - H281DRAFT_04624 0.21 -0.4 18,785 - H281DRAFT_04624 0.21 -0.8 18,878 + H281DRAFT_04624 0.27 -0.0 18,879 - H281DRAFT_04624 0.27 +0.4 18,970 + H281DRAFT_04624 0.32 -0.4 19,214 + H281DRAFT_04624 0.45 +0.1 19,214 + H281DRAFT_04624 0.45 -0.3 19,215 - H281DRAFT_04624 0.45 -0.2 19,337 - H281DRAFT_04624 0.52 -1.1 19,472 - H281DRAFT_04624 0.60 -0.6 19,472 - H281DRAFT_04624 0.60 +0.0 19,498 + H281DRAFT_04624 0.61 +0.0 19,499 - H281DRAFT_04624 0.61 +0.0 19,651 + H281DRAFT_04624 0.70 +2.3 19,651 + H281DRAFT_04624 0.70 +0.9 19,652 - H281DRAFT_04624 0.70 +0.2 19,693 + H281DRAFT_04624 0.72 -0.1 19,694 - H281DRAFT_04624 0.72 -0.1 19,723 + H281DRAFT_04624 0.74 -0.7 19,724 - H281DRAFT_04624 0.74 -0.1 19,724 - H281DRAFT_04624 0.74 +0.1 19,724 - H281DRAFT_04624 0.74 +0.1 19,724 - H281DRAFT_04624 0.74 +0.4 19,972 + H281DRAFT_04624 0.88 -3.1 19,973 - H281DRAFT_04624 0.88 -0.0 20,005 + H281DRAFT_04624 0.90 -0.6 20,005 + H281DRAFT_04624 0.90 -0.3 20,006 - -0.9 20,095 + -0.6 20,096 - -2.6 20,096 - -0.6 20,189 + -0.0 20,286 + -1.2 20,516 + +0.1 20,517 - -0.8 20,517 - +0.2 20,517 - +0.7 20,534 + +1.1 20,618 + H281DRAFT_04625 0.13 -0.1 20,618 + H281DRAFT_04625 0.13 +0.2 20,619 - H281DRAFT_04625 0.13 -0.1 20,762 + H281DRAFT_04625 0.19 +0.4 20,763 - H281DRAFT_04625 0.19 +0.3 20,763 - H281DRAFT_04625 0.19 +0.1 21,179 + H281DRAFT_04625 0.36 -0.2
Or see this region's nucleotide sequence