Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04407

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04405 and H281DRAFT_04406 are separated by 142 nucleotidesH281DRAFT_04406 and H281DRAFT_04407 are separated by 223 nucleotidesH281DRAFT_04407 and H281DRAFT_04408 are separated by 230 nucleotides H281DRAFT_04405: H281DRAFT_04405 - protein of unknown function (DUF4149), at 123,419 to 123,937 _04405 H281DRAFT_04406: H281DRAFT_04406 - putative RNA-binding protein, YhbY family, at 124,080 to 124,607 _04406 H281DRAFT_04407: H281DRAFT_04407 - 23S rRNA Um-2552 2'-O-methyltransferase, at 124,831 to 125,493 _04407 H281DRAFT_04408: H281DRAFT_04408 - membrane protease FtsH catalytic subunit, at 125,724 to 127,613 _04408 Position (kb) 124 125 126Strain fitness (log2 ratio) -1 0 1 2at 123.935 kb on + strandat 123.936 kb on - strandat 124.045 kb on - strandat 124.081 kb on + strandat 124.081 kb on + strandat 124.082 kb on - strandat 124.082 kb on - strandat 124.082 kb on - strandat 124.349 kb on + strand, within H281DRAFT_04406at 124.367 kb on + strand, within H281DRAFT_04406at 124.411 kb on + strand, within H281DRAFT_04406at 124.651 kb on + strandat 124.692 kb on + strandat 124.706 kb on + strandat 124.743 kb on + strandat 124.743 kb on + strandat 125.519 kb on + strandat 125.565 kb on + strandat 125.565 kb on + strandat 125.599 kb on + strandat 125.614 kb on + strandat 125.614 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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123,935 + -1.7
123,936 - -0.6
124,045 - +0.6
124,081 + +0.4
124,081 + +0.1
124,082 - -0.5
124,082 - +0.7
124,082 - -0.1
124,349 + H281DRAFT_04406 0.51 -0.2
124,367 + H281DRAFT_04406 0.54 +0.5
124,411 + H281DRAFT_04406 0.63 -0.4
124,651 + -0.0
124,692 + -1.6
124,706 + +1.5
124,743 + +0.1
124,743 + +0.7
125,519 + +2.3
125,565 + +1.5
125,565 + +0.2
125,599 + +0.1
125,614 + -0.2
125,614 + -0.2

Or see this region's nucleotide sequence