Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03634 and H281DRAFT_03635 are separated by 1 nucleotides H281DRAFT_03635 and H281DRAFT_03636 are separated by 49 nucleotides H281DRAFT_03636 and H281DRAFT_03637 overlap by 8 nucleotides H281DRAFT_03637 and H281DRAFT_03638 are separated by 26 nucleotides
H281DRAFT_03634: H281DRAFT_03634 - 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit, at 144,203 to 144,517
_03634
H281DRAFT_03635: H281DRAFT_03635 - hypothetical protein, at 144,519 to 144,830
_03635
H281DRAFT_03636: H281DRAFT_03636 - Phenylpropionate dioxygenase, large terminal subunit, at 144,880 to 145,983
_03636
H281DRAFT_03637: H281DRAFT_03637 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 145,976 to 146,743
_03637
H281DRAFT_03638: H281DRAFT_03638 - Cupin domain-containing protein, at 146,770 to 147,297
_03638
Position (kb) 144
145
146 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 143.957 kb on - strand at 143.992 kb on - strand at 144.016 kb on + strand at 144.083 kb on + strand at 144.084 kb on - strand at 144.084 kb on - strand at 144.296 kb on + strand, within H281DRAFT_03634 at 144.296 kb on + strand, within H281DRAFT_03634 at 144.412 kb on - strand, within H281DRAFT_03634 at 144.470 kb on + strand, within H281DRAFT_03634 at 144.633 kb on - strand, within H281DRAFT_03635 at 144.829 kb on - strand at 144.928 kb on + strand at 144.952 kb on + strand at 144.953 kb on - strand at 144.953 kb on - strand at 144.958 kb on + strand at 145.336 kb on + strand, within H281DRAFT_03636 at 145.381 kb on + strand, within H281DRAFT_03636 at 145.729 kb on + strand, within H281DRAFT_03636 at 145.780 kb on + strand, within H281DRAFT_03636 at 145.781 kb on - strand, within H281DRAFT_03636 at 145.828 kb on + strand, within H281DRAFT_03636 at 145.981 kb on + strand at 146.165 kb on + strand, within H281DRAFT_03637 at 146.371 kb on - strand, within H281DRAFT_03637 at 146.580 kb on - strand, within H281DRAFT_03637 at 146.603 kb on + strand, within H281DRAFT_03637 at 146.939 kb on - strand, within H281DRAFT_03638
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 143,957 - +0.2 143,992 - +0.4 144,016 + +0.0 144,083 + -0.2 144,084 - +0.1 144,084 - +0.5 144,296 + H281DRAFT_03634 0.30 -3.2 144,296 + H281DRAFT_03634 0.30 -2.1 144,412 - H281DRAFT_03634 0.66 -1.0 144,470 + H281DRAFT_03634 0.85 -1.6 144,633 - H281DRAFT_03635 0.37 -0.6 144,829 - -0.5 144,928 + -0.4 144,952 + +2.8 144,953 - -0.0 144,953 - -0.2 144,958 + -1.1 145,336 + H281DRAFT_03636 0.41 -1.1 145,381 + H281DRAFT_03636 0.45 -0.1 145,729 + H281DRAFT_03636 0.77 +0.7 145,780 + H281DRAFT_03636 0.82 +1.2 145,781 - H281DRAFT_03636 0.82 +0.1 145,828 + H281DRAFT_03636 0.86 -1.3 145,981 + +0.1 146,165 + H281DRAFT_03637 0.25 -0.1 146,371 - H281DRAFT_03637 0.51 +1.1 146,580 - H281DRAFT_03637 0.79 -0.8 146,603 + H281DRAFT_03637 0.82 -0.8 146,939 - H281DRAFT_03638 0.32 -0.2
Or see this region's nucleotide sequence