Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01285

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01284 and H281DRAFT_01285 are separated by 80 nucleotidesH281DRAFT_01285 and H281DRAFT_01286 are separated by 60 nucleotides H281DRAFT_01284: H281DRAFT_01284 - transcriptional regulator, LysR family, at 122,553 to 123,380 _01284 H281DRAFT_01285: H281DRAFT_01285 - ATP adenylyltransferase, at 123,461 to 124,405 _01285 H281DRAFT_01286: H281DRAFT_01286 - mxaL protein, at 124,466 to 125,500 _01286 Position (kb) 123 124 125Strain fitness (log2 ratio) -1 0 1at 122.588 kb on + strandat 122.589 kb on - strandat 122.589 kb on - strandat 122.705 kb on - strand, within H281DRAFT_01284at 122.846 kb on - strand, within H281DRAFT_01284at 123.156 kb on + strand, within H281DRAFT_01284at 123.447 kb on - strandat 123.447 kb on - strandat 123.447 kb on - strandat 123.448 kb on + strandat 123.585 kb on + strand, within H281DRAFT_01285at 123.602 kb on - strand, within H281DRAFT_01285at 123.960 kb on + strand, within H281DRAFT_01285at 124.220 kb on + strand, within H281DRAFT_01285at 124.221 kb on - strand, within H281DRAFT_01285at 124.221 kb on - strand, within H281DRAFT_01285at 124.468 kb on - strandat 124.468 kb on - strandat 124.532 kb on - strandat 125.112 kb on + strand, within H281DRAFT_01286at 125.170 kb on - strand, within H281DRAFT_01286at 125.373 kb on + strand, within H281DRAFT_01286at 125.374 kb on - strand, within H281DRAFT_01286at 125.374 kb on - strand, within H281DRAFT_01286

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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122,588 + +0.3
122,589 - -1.0
122,589 - -0.6
122,705 - H281DRAFT_01284 0.18 +0.5
122,846 - H281DRAFT_01284 0.35 +0.7
123,156 + H281DRAFT_01284 0.73 +0.8
123,447 - +1.4
123,447 - +0.2
123,447 - -0.5
123,448 + -0.3
123,585 + H281DRAFT_01285 0.13 +0.4
123,602 - H281DRAFT_01285 0.15 +0.8
123,960 + H281DRAFT_01285 0.53 +0.3
124,220 + H281DRAFT_01285 0.80 -0.1
124,221 - H281DRAFT_01285 0.80 -0.0
124,221 - H281DRAFT_01285 0.80 +0.5
124,468 - -0.1
124,468 - +0.2
124,532 - +0.8
125,112 + H281DRAFT_01286 0.62 +0.1
125,170 - H281DRAFT_01286 0.68 -0.1
125,373 + H281DRAFT_01286 0.88 +0.4
125,374 - H281DRAFT_01286 0.88 -0.7
125,374 - H281DRAFT_01286 0.88 -0.8

Or see this region's nucleotide sequence