Experiment: 1-ethyl-3-methylimidazolium chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_1517 and Ga0059261_1518 are separated by 56 nucleotides Ga0059261_1518 and Ga0059261_1519 overlap by 4 nucleotides Ga0059261_1519 and Ga0059261_1520 overlap by 4 nucleotides
Ga0059261_1517: Ga0059261_1517 - Predicted acetyltransferase, at 1,596,682 to 1,597,167
_1517
Ga0059261_1518: Ga0059261_1518 - Uncharacterized protein conserved in bacteria, at 1,597,224 to 1,597,787
_1518
Ga0059261_1519: Ga0059261_1519 - NUDIX domain, at 1,597,784 to 1,598,380
_1519
Ga0059261_1520: Ga0059261_1520 - Poly A polymerase head domain/Probable RNA and SrmB- binding site of polymerase A, at 1,598,377 to 1,599,570
_1520
Position (kb) 1597
1598
1599 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1596.842 kb on + strand, within Ga0059261_1517 at 1596.842 kb on + strand, within Ga0059261_1517 at 1596.843 kb on - strand, within Ga0059261_1517 at 1596.855 kb on + strand, within Ga0059261_1517 at 1596.856 kb on - strand, within Ga0059261_1517 at 1596.951 kb on + strand, within Ga0059261_1517 at 1597.040 kb on - strand, within Ga0059261_1517 at 1597.040 kb on - strand, within Ga0059261_1517 at 1597.042 kb on + strand, within Ga0059261_1517 at 1597.042 kb on + strand, within Ga0059261_1517 at 1597.042 kb on + strand, within Ga0059261_1517 at 1597.042 kb on + strand, within Ga0059261_1517 at 1597.043 kb on - strand, within Ga0059261_1517 at 1597.043 kb on - strand, within Ga0059261_1517 at 1597.043 kb on - strand, within Ga0059261_1517 at 1597.043 kb on - strand, within Ga0059261_1517 at 1597.189 kb on + strand at 1597.201 kb on + strand at 1597.202 kb on - strand at 1597.202 kb on - strand at 1597.202 kb on - strand at 1597.367 kb on + strand, within Ga0059261_1518 at 1597.367 kb on + strand, within Ga0059261_1518 at 1597.368 kb on - strand, within Ga0059261_1518 at 1597.550 kb on + strand, within Ga0059261_1518 at 1597.695 kb on + strand, within Ga0059261_1518 at 1597.695 kb on + strand, within Ga0059261_1518 at 1597.695 kb on + strand, within Ga0059261_1518 at 1597.695 kb on + strand, within Ga0059261_1518 at 1597.695 kb on + strand, within Ga0059261_1518 at 1597.695 kb on + strand, within Ga0059261_1518 at 1597.695 kb on + strand, within Ga0059261_1518 at 1597.695 kb on + strand, within Ga0059261_1518 at 1597.696 kb on - strand, within Ga0059261_1518 at 1597.696 kb on - strand, within Ga0059261_1518 at 1597.696 kb on - strand, within Ga0059261_1518 at 1597.698 kb on + strand, within Ga0059261_1518 at 1597.698 kb on + strand, within Ga0059261_1518 at 1597.698 kb on + strand, within Ga0059261_1518 at 1597.698 kb on + strand, within Ga0059261_1518 at 1597.699 kb on - strand, within Ga0059261_1518 at 1597.699 kb on - strand, within Ga0059261_1518 at 1597.699 kb on - strand, within Ga0059261_1518 at 1597.699 kb on - strand, within Ga0059261_1518 at 1597.699 kb on - strand, within Ga0059261_1518 at 1598.085 kb on + strand, within Ga0059261_1519 at 1598.086 kb on - strand, within Ga0059261_1519 at 1598.086 kb on - strand, within Ga0059261_1519 at 1598.288 kb on + strand, within Ga0059261_1519 at 1598.288 kb on + strand, within Ga0059261_1519 at 1598.291 kb on + strand, within Ga0059261_1519
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 10 mM remove 1,596,842 + Ga0059261_1517 0.33 -0.3 1,596,842 + Ga0059261_1517 0.33 +0.1 1,596,843 - Ga0059261_1517 0.33 +0.0 1,596,855 + Ga0059261_1517 0.36 +0.0 1,596,856 - Ga0059261_1517 0.36 -0.3 1,596,951 + Ga0059261_1517 0.55 -1.0 1,597,040 - Ga0059261_1517 0.74 +0.2 1,597,040 - Ga0059261_1517 0.74 -0.1 1,597,042 + Ga0059261_1517 0.74 +0.3 1,597,042 + Ga0059261_1517 0.74 -0.8 1,597,042 + Ga0059261_1517 0.74 +2.5 1,597,042 + Ga0059261_1517 0.74 -0.6 1,597,043 - Ga0059261_1517 0.74 +0.8 1,597,043 - Ga0059261_1517 0.74 -0.0 1,597,043 - Ga0059261_1517 0.74 -0.4 1,597,043 - Ga0059261_1517 0.74 -0.7 1,597,189 + -0.4 1,597,201 + -0.1 1,597,202 - -2.7 1,597,202 - -0.7 1,597,202 - +0.6 1,597,367 + Ga0059261_1518 0.25 -0.5 1,597,367 + Ga0059261_1518 0.25 +0.4 1,597,368 - Ga0059261_1518 0.26 +0.7 1,597,550 + Ga0059261_1518 0.58 -1.2 1,597,695 + Ga0059261_1518 0.84 -0.4 1,597,695 + Ga0059261_1518 0.84 -0.1 1,597,695 + Ga0059261_1518 0.84 +0.8 1,597,695 + Ga0059261_1518 0.84 -1.3 1,597,695 + Ga0059261_1518 0.84 -1.6 1,597,695 + Ga0059261_1518 0.84 -0.8 1,597,695 + Ga0059261_1518 0.84 +0.7 1,597,695 + Ga0059261_1518 0.84 +1.2 1,597,696 - Ga0059261_1518 0.84 -1.5 1,597,696 - Ga0059261_1518 0.84 -0.8 1,597,696 - Ga0059261_1518 0.84 +1.0 1,597,698 + Ga0059261_1518 0.84 -0.9 1,597,698 + Ga0059261_1518 0.84 +0.7 1,597,698 + Ga0059261_1518 0.84 +1.0 1,597,698 + Ga0059261_1518 0.84 -0.1 1,597,699 - Ga0059261_1518 0.84 +0.0 1,597,699 - Ga0059261_1518 0.84 -2.0 1,597,699 - Ga0059261_1518 0.84 -1.1 1,597,699 - Ga0059261_1518 0.84 -0.4 1,597,699 - Ga0059261_1518 0.84 +0.5 1,598,085 + Ga0059261_1519 0.50 +0.2 1,598,086 - Ga0059261_1519 0.51 -0.2 1,598,086 - Ga0059261_1519 0.51 -0.4 1,598,288 + Ga0059261_1519 0.84 +0.6 1,598,288 + Ga0059261_1519 0.84 +1.1 1,598,291 + Ga0059261_1519 0.85 +0.3
Or see this region's nucleotide sequence