Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0770

Experiment: 1-ethyl-3-methylimidazolium chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0769 and Ga0059261_0770 overlap by 4 nucleotidesGa0059261_0770 and Ga0059261_0771 overlap by 1 nucleotides Ga0059261_0769: Ga0059261_0769 - Beta-glucosidase-related glycosidases, at 797,272 to 799,788 _0769 Ga0059261_0770: Ga0059261_0770 - hypothetical protein, at 799,785 to 800,099 _0770 Ga0059261_0771: Ga0059261_0771 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 800,099 to 801,763 _0771 Position (kb) 799 800 801Strain fitness (log2 ratio) -2 -1 0 1 2at 798.939 kb on + strand, within Ga0059261_0769at 798.939 kb on + strand, within Ga0059261_0769at 798.939 kb on + strand, within Ga0059261_0769at 798.940 kb on - strand, within Ga0059261_0769at 798.940 kb on - strand, within Ga0059261_0769at 798.940 kb on - strand, within Ga0059261_0769at 798.940 kb on - strandat 799.106 kb on + strand, within Ga0059261_0769at 799.106 kb on + strand, within Ga0059261_0769at 799.106 kb on + strand, within Ga0059261_0769at 799.106 kb on + strand, within Ga0059261_0769at 799.106 kb on + strand, within Ga0059261_0769at 799.106 kb on + strand, within Ga0059261_0769at 799.106 kb on + strand, within Ga0059261_0769at 799.106 kb on + strand, within Ga0059261_0769at 799.107 kb on - strand, within Ga0059261_0769at 799.107 kb on - strand, within Ga0059261_0769at 799.107 kb on - strand, within Ga0059261_0769at 799.107 kb on - strand, within Ga0059261_0769at 799.107 kb on - strand, within Ga0059261_0769at 799.107 kb on - strand, within Ga0059261_0769at 799.127 kb on + strand, within Ga0059261_0769at 799.127 kb on + strand, within Ga0059261_0769at 799.127 kb on + strand, within Ga0059261_0769at 799.127 kb on + strand, within Ga0059261_0769at 799.128 kb on - strandat 799.187 kb on + strand, within Ga0059261_0769at 799.188 kb on - strand, within Ga0059261_0769at 799.239 kb on - strand, within Ga0059261_0769at 799.297 kb on + strand, within Ga0059261_0769at 799.297 kb on + strand, within Ga0059261_0769at 799.297 kb on + strand, within Ga0059261_0769at 799.297 kb on + strand, within Ga0059261_0769at 799.297 kb on + strand, within Ga0059261_0769at 799.298 kb on - strand, within Ga0059261_0769at 799.298 kb on - strand, within Ga0059261_0769at 799.298 kb on - strand, within Ga0059261_0769at 799.310 kb on + strand, within Ga0059261_0769at 799.310 kb on + strand, within Ga0059261_0769at 799.310 kb on + strand, within Ga0059261_0769at 799.310 kb on + strand, within Ga0059261_0769at 799.310 kb on + strand, within Ga0059261_0769at 799.311 kb on - strand, within Ga0059261_0769at 799.352 kb on + strand, within Ga0059261_0769at 799.352 kb on + strand, within Ga0059261_0769at 799.352 kb on + strand, within Ga0059261_0769at 799.353 kb on - strand, within Ga0059261_0769at 799.353 kb on - strand, within Ga0059261_0769at 799.353 kb on - strand, within Ga0059261_0769at 799.353 kb on - strand, within Ga0059261_0769at 799.353 kb on - strand, within Ga0059261_0769at 799.392 kb on + strand, within Ga0059261_0769at 799.546 kb on + strandat 799.546 kb on + strandat 799.712 kb on + strandat 799.713 kb on - strandat 799.852 kb on + strand, within Ga0059261_0770at 799.852 kb on + strand, within Ga0059261_0770at 800.084 kb on + strandat 800.232 kb on + strandat 800.233 kb on - strandat 800.233 kb on - strandat 800.233 kb on - strandat 800.397 kb on + strand, within Ga0059261_0771at 800.398 kb on - strand, within Ga0059261_0771at 800.398 kb on - strand, within Ga0059261_0771at 800.398 kb on - strandat 800.425 kb on - strand, within Ga0059261_0771at 800.428 kb on + strand, within Ga0059261_0771at 800.428 kb on + strand, within Ga0059261_0771at 800.428 kb on + strand, within Ga0059261_0771at 800.429 kb on - strand, within Ga0059261_0771at 800.429 kb on - strand, within Ga0059261_0771at 800.429 kb on - strand, within Ga0059261_0771at 800.429 kb on - strand, within Ga0059261_0771at 800.429 kb on - strand, within Ga0059261_0771at 800.429 kb on - strand, within Ga0059261_0771at 800.474 kb on - strand, within Ga0059261_0771at 800.481 kb on + strand, within Ga0059261_0771at 800.482 kb on - strand, within Ga0059261_0771at 800.482 kb on - strand, within Ga0059261_0771at 800.632 kb on + strand, within Ga0059261_0771at 800.632 kb on + strand, within Ga0059261_0771at 800.633 kb on - strand, within Ga0059261_0771at 800.922 kb on + strand, within Ga0059261_0771at 800.923 kb on - strand, within Ga0059261_0771at 800.949 kb on - strand, within Ga0059261_0771at 800.991 kb on + strand, within Ga0059261_0771at 800.992 kb on - strand, within Ga0059261_0771at 801.054 kb on + strand, within Ga0059261_0771at 801.054 kb on + strand, within Ga0059261_0771at 801.055 kb on - strand, within Ga0059261_0771at 801.055 kb on - strand, within Ga0059261_0771at 801.055 kb on - strand, within Ga0059261_0771

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 10 mM
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798,939 + Ga0059261_0769 0.66 -0.9
798,939 + Ga0059261_0769 0.66 -0.3
798,939 + Ga0059261_0769 0.66 +0.5
798,940 - Ga0059261_0769 0.66 -0.7
798,940 - Ga0059261_0769 0.66 -0.1
798,940 - Ga0059261_0769 0.66 -0.3
798,940 - +0.7
799,106 + Ga0059261_0769 0.73 +0.6
799,106 + Ga0059261_0769 0.73 +0.9
799,106 + Ga0059261_0769 0.73 +0.5
799,106 + Ga0059261_0769 0.73 -0.3
799,106 + Ga0059261_0769 0.73 +0.3
799,106 + Ga0059261_0769 0.73 -0.6
799,106 + Ga0059261_0769 0.73 +0.1
799,106 + Ga0059261_0769 0.73 -0.5
799,107 - Ga0059261_0769 0.73 +0.2
799,107 - Ga0059261_0769 0.73 +1.3
799,107 - Ga0059261_0769 0.73 -0.4
799,107 - Ga0059261_0769 0.73 -0.5
799,107 - Ga0059261_0769 0.73 -0.0
799,107 - Ga0059261_0769 0.73 +0.7
799,127 + Ga0059261_0769 0.74 -0.2
799,127 + Ga0059261_0769 0.74 +0.2
799,127 + Ga0059261_0769 0.74 -0.4
799,127 + Ga0059261_0769 0.74 +0.2
799,128 - +1.9
799,187 + Ga0059261_0769 0.76 +0.1
799,188 - Ga0059261_0769 0.76 -0.5
799,239 - Ga0059261_0769 0.78 -0.2
799,297 + Ga0059261_0769 0.80 +0.4
799,297 + Ga0059261_0769 0.80 +0.0
799,297 + Ga0059261_0769 0.80 +1.3
799,297 + Ga0059261_0769 0.80 +1.6
799,297 + Ga0059261_0769 0.80 -0.4
799,298 - Ga0059261_0769 0.80 -0.5
799,298 - Ga0059261_0769 0.80 +1.0
799,298 - Ga0059261_0769 0.80 +0.4
799,310 + Ga0059261_0769 0.81 -1.6
799,310 + Ga0059261_0769 0.81 -0.0
799,310 + Ga0059261_0769 0.81 -1.1
799,310 + Ga0059261_0769 0.81 -0.2
799,310 + Ga0059261_0769 0.81 -0.8
799,311 - Ga0059261_0769 0.81 +0.3
799,352 + Ga0059261_0769 0.83 +1.3
799,352 + Ga0059261_0769 0.83 +0.0
799,352 + Ga0059261_0769 0.83 +0.4
799,353 - Ga0059261_0769 0.83 +0.7
799,353 - Ga0059261_0769 0.83 +0.2
799,353 - Ga0059261_0769 0.83 +0.1
799,353 - Ga0059261_0769 0.83 -0.3
799,353 - Ga0059261_0769 0.83 -1.1
799,392 + Ga0059261_0769 0.84 -2.0
799,546 + +0.3
799,546 + -0.4
799,712 + -2.6
799,713 - -1.4
799,852 + Ga0059261_0770 0.21 +0.6
799,852 + Ga0059261_0770 0.21 +0.2
800,084 + +2.0
800,232 + +1.2
800,233 - +0.5
800,233 - -0.4
800,233 - +0.1
800,397 + Ga0059261_0771 0.18 -1.1
800,398 - Ga0059261_0771 0.18 +1.0
800,398 - Ga0059261_0771 0.18 -0.3
800,398 - +0.8
800,425 - Ga0059261_0771 0.20 -0.5
800,428 + Ga0059261_0771 0.20 -1.6
800,428 + Ga0059261_0771 0.20 +0.1
800,428 + Ga0059261_0771 0.20 -2.0
800,429 - Ga0059261_0771 0.20 -0.0
800,429 - Ga0059261_0771 0.20 +1.1
800,429 - Ga0059261_0771 0.20 +0.9
800,429 - Ga0059261_0771 0.20 +1.1
800,429 - Ga0059261_0771 0.20 +0.6
800,429 - Ga0059261_0771 0.20 -0.3
800,474 - Ga0059261_0771 0.23 +1.3
800,481 + Ga0059261_0771 0.23 +1.8
800,482 - Ga0059261_0771 0.23 -0.8
800,482 - Ga0059261_0771 0.23 +0.2
800,632 + Ga0059261_0771 0.32 +0.3
800,632 + Ga0059261_0771 0.32 -0.2
800,633 - Ga0059261_0771 0.32 -0.4
800,922 + Ga0059261_0771 0.49 -0.1
800,923 - Ga0059261_0771 0.49 +0.3
800,949 - Ga0059261_0771 0.51 -0.4
800,991 + Ga0059261_0771 0.54 -0.3
800,992 - Ga0059261_0771 0.54 +0.3
801,054 + Ga0059261_0771 0.57 +0.2
801,054 + Ga0059261_0771 0.57 +0.8
801,055 - Ga0059261_0771 0.57 +0.0
801,055 - Ga0059261_0771 0.57 +0.6
801,055 - Ga0059261_0771 0.57 -0.8

Or see this region's nucleotide sequence