Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0263

Experiment: 1-ethyl-3-methylimidazolium chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0262 and Ga0059261_0263 are separated by 6 nucleotidesGa0059261_0263 and Ga0059261_0264 are separated by 19 nucleotides Ga0059261_0262: Ga0059261_0262 - Transcriptional regulator, at 252,354 to 253,247 _0262 Ga0059261_0263: Ga0059261_0263 - 3-oxoacid CoA-transferase, B subunit, at 253,254 to 253,904 _0263 Ga0059261_0264: Ga0059261_0264 - HAD superfamily, subfamily IIIB (Acid phosphatase), at 253,924 to 254,916 _0264 Position (kb) 253 254Strain fitness (log2 ratio) -1 0 1at 252.293 kb on + strandat 252.293 kb on + strandat 252.294 kb on - strandat 252.294 kb on - strandat 252.294 kb on - strandat 252.299 kb on + strandat 252.300 kb on - strandat 252.300 kb on - strandat 252.300 kb on - strandat 252.300 kb on - strandat 252.302 kb on + strandat 252.302 kb on + strandat 252.302 kb on + strandat 252.303 kb on - strandat 252.303 kb on - strandat 252.303 kb on - strandat 252.305 kb on - strandat 252.309 kb on + strandat 252.309 kb on + strandat 252.309 kb on + strandat 252.310 kb on - strandat 252.310 kb on - strandat 252.314 kb on + strandat 252.315 kb on - strandat 252.315 kb on - strandat 252.342 kb on + strandat 252.342 kb on + strandat 252.342 kb on + strandat 252.342 kb on + strandat 252.343 kb on - strandat 252.343 kb on - strandat 252.343 kb on - strandat 252.386 kb on + strandat 252.387 kb on - strandat 252.387 kb on - strandat 252.449 kb on + strand, within Ga0059261_0262at 252.449 kb on + strand, within Ga0059261_0262at 252.450 kb on - strand, within Ga0059261_0262at 252.471 kb on + strand, within Ga0059261_0262at 252.471 kb on + strand, within Ga0059261_0262at 252.471 kb on + strand, within Ga0059261_0262at 252.471 kb on + strand, within Ga0059261_0262at 252.471 kb on + strand, within Ga0059261_0262at 252.471 kb on + strand, within Ga0059261_0262at 252.472 kb on - strand, within Ga0059261_0262at 252.472 kb on - strand, within Ga0059261_0262at 252.472 kb on - strand, within Ga0059261_0262at 252.472 kb on - strand, within Ga0059261_0262at 252.669 kb on - strand, within Ga0059261_0262at 252.775 kb on - strand, within Ga0059261_0262at 252.775 kb on - strand, within Ga0059261_0262at 252.775 kb on - strand, within Ga0059261_0262at 252.856 kb on + strand, within Ga0059261_0262at 252.856 kb on + strand, within Ga0059261_0262at 252.856 kb on + strand, within Ga0059261_0262at 252.856 kb on + strand, within Ga0059261_0262at 252.856 kb on + strand, within Ga0059261_0262at 252.856 kb on + strand, within Ga0059261_0262at 252.856 kb on + strand, within Ga0059261_0262at 252.857 kb on - strand, within Ga0059261_0262at 252.857 kb on - strand, within Ga0059261_0262at 252.857 kb on - strand, within Ga0059261_0262at 252.857 kb on - strand, within Ga0059261_0262at 252.857 kb on - strand, within Ga0059261_0262at 252.857 kb on - strand, within Ga0059261_0262at 252.857 kb on - strand, within Ga0059261_0262at 252.857 kb on - strand, within Ga0059261_0262at 252.902 kb on + strand, within Ga0059261_0262at 252.902 kb on + strand, within Ga0059261_0262at 252.902 kb on + strand, within Ga0059261_0262at 252.902 kb on + strand, within Ga0059261_0262at 252.903 kb on - strand, within Ga0059261_0262at 253.023 kb on + strand, within Ga0059261_0262at 253.023 kb on + strand, within Ga0059261_0262at 253.024 kb on - strand, within Ga0059261_0262at 253.024 kb on - strand, within Ga0059261_0262at 253.024 kb on - strand, within Ga0059261_0262at 253.280 kb on - strandat 253.280 kb on - strandat 253.398 kb on - strand, within Ga0059261_0263at 253.398 kb on - strand, within Ga0059261_0263at 253.398 kb on - strand, within Ga0059261_0263at 253.479 kb on + strand, within Ga0059261_0263at 253.479 kb on + strand, within Ga0059261_0263at 253.479 kb on + strand, within Ga0059261_0263at 253.480 kb on - strand, within Ga0059261_0263at 253.480 kb on - strand, within Ga0059261_0263at 253.480 kb on - strand, within Ga0059261_0263at 253.616 kb on + strand, within Ga0059261_0263at 253.617 kb on - strand, within Ga0059261_0263at 253.617 kb on - strand, within Ga0059261_0263at 253.660 kb on + strand, within Ga0059261_0263at 253.661 kb on - strand, within Ga0059261_0263at 253.733 kb on - strand, within Ga0059261_0263at 253.843 kb on + strandat 253.843 kb on + strandat 253.844 kb on - strandat 253.844 kb on - strandat 253.844 kb on - strandat 253.844 kb on - strandat 254.105 kb on + strand, within Ga0059261_0264at 254.259 kb on + strand, within Ga0059261_0264at 254.448 kb on - strand, within Ga0059261_0264at 254.555 kb on + strand, within Ga0059261_0264at 254.556 kb on - strand, within Ga0059261_0264at 254.556 kb on - strand, within Ga0059261_0264at 254.556 kb on - strand, within Ga0059261_0264at 254.570 kb on + strand, within Ga0059261_0264at 254.571 kb on - strand, within Ga0059261_0264at 254.571 kb on - strand, within Ga0059261_0264at 254.601 kb on + strand, within Ga0059261_0264at 254.601 kb on + strand, within Ga0059261_0264at 254.601 kb on + strand, within Ga0059261_0264at 254.602 kb on - strand, within Ga0059261_0264at 254.602 kb on - strand, within Ga0059261_0264at 254.602 kb on - strand, within Ga0059261_0264at 254.602 kb on - strand, within Ga0059261_0264at 254.602 kb on - strand, within Ga0059261_0264at 254.602 kb on - strand, within Ga0059261_0264at 254.682 kb on + strand, within Ga0059261_0264at 254.682 kb on + strand, within Ga0059261_0264at 254.683 kb on - strand, within Ga0059261_0264at 254.683 kb on - strand, within Ga0059261_0264at 254.683 kb on - strand, within Ga0059261_0264at 254.683 kb on - strand, within Ga0059261_0264at 254.730 kb on + strand, within Ga0059261_0264at 254.731 kb on - strand, within Ga0059261_0264

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 10 mM
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252,293 + -0.1
252,293 + -1.3
252,294 - -0.2
252,294 - +0.6
252,294 - -0.8
252,299 + +0.4
252,300 - -0.2
252,300 - -0.3
252,300 - -0.7
252,300 - +0.3
252,302 + +0.5
252,302 + -1.2
252,302 + -1.3
252,303 - -0.1
252,303 - -1.5
252,303 - -0.5
252,305 - +0.2
252,309 + +1.3
252,309 + -1.3
252,309 + -0.7
252,310 - +0.8
252,310 - +1.3
252,314 + +0.3
252,315 - -0.3
252,315 - -1.6
252,342 + +0.8
252,342 + -0.5
252,342 + -0.5
252,342 + -0.6
252,343 - -0.7
252,343 - +1.1
252,343 - -1.0
252,386 + -0.1
252,387 - +0.6
252,387 - +1.5
252,449 + Ga0059261_0262 0.11 -0.2
252,449 + Ga0059261_0262 0.11 +0.0
252,450 - Ga0059261_0262 0.11 -1.0
252,471 + Ga0059261_0262 0.13 +0.3
252,471 + Ga0059261_0262 0.13 -0.3
252,471 + Ga0059261_0262 0.13 +0.2
252,471 + Ga0059261_0262 0.13 -0.5
252,471 + Ga0059261_0262 0.13 +0.5
252,471 + Ga0059261_0262 0.13 +1.1
252,472 - Ga0059261_0262 0.13 -0.5
252,472 - Ga0059261_0262 0.13 +0.5
252,472 - Ga0059261_0262 0.13 +0.2
252,472 - Ga0059261_0262 0.13 +1.0
252,669 - Ga0059261_0262 0.35 -1.3
252,775 - Ga0059261_0262 0.47 -0.5
252,775 - Ga0059261_0262 0.47 +0.7
252,775 - Ga0059261_0262 0.47 -0.2
252,856 + Ga0059261_0262 0.56 -0.0
252,856 + Ga0059261_0262 0.56 +1.3
252,856 + Ga0059261_0262 0.56 +1.0
252,856 + Ga0059261_0262 0.56 -0.2
252,856 + Ga0059261_0262 0.56 +0.6
252,856 + Ga0059261_0262 0.56 +0.2
252,856 + Ga0059261_0262 0.56 +0.1
252,857 - Ga0059261_0262 0.56 +0.9
252,857 - Ga0059261_0262 0.56 -0.7
252,857 - Ga0059261_0262 0.56 -1.7
252,857 - Ga0059261_0262 0.56 -0.2
252,857 - Ga0059261_0262 0.56 -0.6
252,857 - Ga0059261_0262 0.56 +0.6
252,857 - Ga0059261_0262 0.56 +0.2
252,857 - Ga0059261_0262 0.56 +0.4
252,902 + Ga0059261_0262 0.61 +0.8
252,902 + Ga0059261_0262 0.61 -0.2
252,902 + Ga0059261_0262 0.61 -1.0
252,902 + Ga0059261_0262 0.61 +0.3
252,903 - Ga0059261_0262 0.61 -0.1
253,023 + Ga0059261_0262 0.75 +0.4
253,023 + Ga0059261_0262 0.75 +0.9
253,024 - Ga0059261_0262 0.75 -0.3
253,024 - Ga0059261_0262 0.75 +0.2
253,024 - Ga0059261_0262 0.75 +0.1
253,280 - -0.4
253,280 - -0.1
253,398 - Ga0059261_0263 0.22 -0.0
253,398 - Ga0059261_0263 0.22 +1.1
253,398 - Ga0059261_0263 0.22 +0.3
253,479 + Ga0059261_0263 0.35 +0.2
253,479 + Ga0059261_0263 0.35 +0.3
253,479 + Ga0059261_0263 0.35 +0.5
253,480 - Ga0059261_0263 0.35 -1.4
253,480 - Ga0059261_0263 0.35 +0.1
253,480 - Ga0059261_0263 0.35 -0.4
253,616 + Ga0059261_0263 0.56 +0.8
253,617 - Ga0059261_0263 0.56 +0.6
253,617 - Ga0059261_0263 0.56 +0.8
253,660 + Ga0059261_0263 0.62 +0.6
253,661 - Ga0059261_0263 0.63 -0.4
253,733 - Ga0059261_0263 0.74 +0.1
253,843 + -0.0
253,843 + +0.5
253,844 - -0.6
253,844 - -0.7
253,844 - -0.4
253,844 - -1.3
254,105 + Ga0059261_0264 0.18 -0.2
254,259 + Ga0059261_0264 0.34 -0.7
254,448 - Ga0059261_0264 0.53 +0.2
254,555 + Ga0059261_0264 0.64 +0.5
254,556 - Ga0059261_0264 0.64 +0.3
254,556 - Ga0059261_0264 0.64 +0.5
254,556 - Ga0059261_0264 0.64 -0.7
254,570 + Ga0059261_0264 0.65 +0.1
254,571 - Ga0059261_0264 0.65 -0.3
254,571 - Ga0059261_0264 0.65 +0.1
254,601 + Ga0059261_0264 0.68 -0.1
254,601 + Ga0059261_0264 0.68 +0.1
254,601 + Ga0059261_0264 0.68 +0.6
254,602 - Ga0059261_0264 0.68 -0.3
254,602 - Ga0059261_0264 0.68 -0.8
254,602 - Ga0059261_0264 0.68 -0.8
254,602 - Ga0059261_0264 0.68 -0.4
254,602 - Ga0059261_0264 0.68 +0.3
254,602 - Ga0059261_0264 0.68 +0.5
254,682 + Ga0059261_0264 0.76 +0.5
254,682 + Ga0059261_0264 0.76 +0.6
254,683 - Ga0059261_0264 0.76 -1.4
254,683 - Ga0059261_0264 0.76 -1.0
254,683 - Ga0059261_0264 0.76 -0.3
254,683 - Ga0059261_0264 0.76 -1.2
254,730 + Ga0059261_0264 0.81 +0.5
254,731 - Ga0059261_0264 0.81 -0.4

Or see this region's nucleotide sequence