Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0219

Experiment: 1-ethyl-3-methylimidazolium chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0217 and Ga0059261_0218 are separated by 33 nucleotidesGa0059261_0218 and Ga0059261_0219 overlap by 1 nucleotidesGa0059261_0219 and Ga0059261_0220 are separated by 27 nucleotides Ga0059261_0217: Ga0059261_0217 - TonB-dependent siderophore receptor, at 204,553 to 206,676 _0217 Ga0059261_0218: Ga0059261_0218 - Protein of unknown function (DUF2971), at 206,710 to 207,360 _0218 Ga0059261_0219: Ga0059261_0219 - Lactate dehydrogenase and related dehydrogenases, at 207,360 to 208,370 _0219 Ga0059261_0220: Ga0059261_0220 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 208,398 to 209,789 _0220 Position (kb) 207 208 209Strain fitness (log2 ratio) -2 -1 0 1 2 3at 206.384 kb on - strand, within Ga0059261_0217at 206.506 kb on + strandat 206.506 kb on + strandat 206.593 kb on + strandat 206.594 kb on - strandat 206.594 kb on - strandat 206.623 kb on + strandat 206.624 kb on - strandat 206.624 kb on - strandat 206.629 kb on + strandat 206.630 kb on - strandat 206.712 kb on - strandat 206.830 kb on - strand, within Ga0059261_0218at 206.830 kb on - strand, within Ga0059261_0218at 206.961 kb on + strand, within Ga0059261_0218at 206.962 kb on - strand, within Ga0059261_0218at 206.962 kb on - strand, within Ga0059261_0218at 206.962 kb on - strand, within Ga0059261_0218at 206.963 kb on + strand, within Ga0059261_0218at 206.963 kb on + strand, within Ga0059261_0218at 206.964 kb on - strand, within Ga0059261_0218at 206.964 kb on - strand, within Ga0059261_0218at 207.038 kb on + strand, within Ga0059261_0218at 207.038 kb on + strand, within Ga0059261_0218at 207.039 kb on - strand, within Ga0059261_0218at 207.039 kb on - strand, within Ga0059261_0218at 207.155 kb on + strand, within Ga0059261_0218at 207.155 kb on + strand, within Ga0059261_0218at 207.155 kb on + strand, within Ga0059261_0218at 207.155 kb on + strand, within Ga0059261_0218at 207.155 kb on + strand, within Ga0059261_0218at 207.155 kb on + strand, within Ga0059261_0218at 207.155 kb on + strandat 207.155 kb on + strandat 207.155 kb on + strand, within Ga0059261_0218at 207.155 kb on + strand, within Ga0059261_0218at 207.156 kb on - strand, within Ga0059261_0218at 207.156 kb on - strand, within Ga0059261_0218at 207.156 kb on - strand, within Ga0059261_0218at 207.156 kb on - strand, within Ga0059261_0218at 207.156 kb on - strand, within Ga0059261_0218at 207.218 kb on + strand, within Ga0059261_0218at 207.218 kb on + strand, within Ga0059261_0218at 207.218 kb on + strand, within Ga0059261_0218at 207.323 kb on + strandat 207.324 kb on - strandat 207.324 kb on - strandat 207.589 kb on + strand, within Ga0059261_0219at 207.589 kb on + strand, within Ga0059261_0219at 207.589 kb on + strand, within Ga0059261_0219at 207.589 kb on + strand, within Ga0059261_0219at 207.589 kb on + strand, within Ga0059261_0219at 207.589 kb on + strand, within Ga0059261_0219at 207.589 kb on + strand, within Ga0059261_0219at 207.589 kb on + strand, within Ga0059261_0219at 207.589 kb on + strand, within Ga0059261_0219at 207.590 kb on - strand, within Ga0059261_0219at 207.674 kb on + strand, within Ga0059261_0219at 207.674 kb on + strandat 207.674 kb on + strand, within Ga0059261_0219at 207.675 kb on - strand, within Ga0059261_0219at 207.805 kb on + strand, within Ga0059261_0219at 207.805 kb on + strand, within Ga0059261_0219at 207.805 kb on + strand, within Ga0059261_0219at 207.805 kb on + strand, within Ga0059261_0219at 207.805 kb on + strand, within Ga0059261_0219at 207.805 kb on + strand, within Ga0059261_0219at 207.805 kb on + strand, within Ga0059261_0219at 207.806 kb on - strand, within Ga0059261_0219at 207.806 kb on - strand, within Ga0059261_0219at 207.806 kb on - strand, within Ga0059261_0219at 207.806 kb on - strand, within Ga0059261_0219at 207.980 kb on + strand, within Ga0059261_0219at 207.980 kb on + strand, within Ga0059261_0219at 207.980 kb on + strand, within Ga0059261_0219at 207.981 kb on - strand, within Ga0059261_0219at 207.981 kb on - strand, within Ga0059261_0219at 207.981 kb on - strand, within Ga0059261_0219at 208.041 kb on + strand, within Ga0059261_0219at 208.041 kb on + strand, within Ga0059261_0219at 208.041 kb on + strand, within Ga0059261_0219at 208.042 kb on - strand, within Ga0059261_0219at 208.042 kb on - strand, within Ga0059261_0219at 208.042 kb on - strand, within Ga0059261_0219at 208.042 kb on - strand, within Ga0059261_0219at 208.042 kb on - strand, within Ga0059261_0219at 208.042 kb on - strand, within Ga0059261_0219at 208.072 kb on + strand, within Ga0059261_0219at 208.072 kb on + strand, within Ga0059261_0219at 208.072 kb on + strand, within Ga0059261_0219at 208.072 kb on + strand, within Ga0059261_0219at 208.339 kb on + strandat 208.339 kb on + strandat 208.340 kb on - strandat 208.340 kb on - strandat 208.383 kb on + strandat 208.447 kb on + strandat 208.447 kb on + strandat 208.448 kb on - strandat 208.448 kb on - strandat 208.448 kb on - strandat 208.460 kb on + strandat 208.460 kb on + strandat 208.461 kb on - strandat 208.540 kb on + strand, within Ga0059261_0220at 208.540 kb on + strand, within Ga0059261_0220at 208.540 kb on + strand, within Ga0059261_0220at 208.541 kb on - strand, within Ga0059261_0220at 208.541 kb on - strand, within Ga0059261_0220at 208.541 kb on - strand, within Ga0059261_0220at 208.637 kb on + strand, within Ga0059261_0220at 208.638 kb on - strand, within Ga0059261_0220at 208.638 kb on - strand, within Ga0059261_0220at 208.786 kb on + strand, within Ga0059261_0220at 208.787 kb on - strand, within Ga0059261_0220at 208.787 kb on - strand, within Ga0059261_0220at 208.787 kb on - strand, within Ga0059261_0220at 208.864 kb on + strand, within Ga0059261_0220at 208.864 kb on + strand, within Ga0059261_0220at 208.864 kb on + strand, within Ga0059261_0220at 208.865 kb on - strand, within Ga0059261_0220at 208.865 kb on - strand, within Ga0059261_0220at 208.865 kb on - strand, within Ga0059261_0220at 208.867 kb on + strand, within Ga0059261_0220at 208.867 kb on + strand, within Ga0059261_0220at 208.868 kb on - strand, within Ga0059261_0220at 209.338 kb on + strand, within Ga0059261_0220at 209.338 kb on + strand, within Ga0059261_0220at 209.338 kb on + strand, within Ga0059261_0220

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 10 mM
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206,384 - Ga0059261_0217 0.86 +0.3
206,506 + +0.4
206,506 + +0.8
206,593 + +0.1
206,594 - -1.2
206,594 - +0.5
206,623 + +1.3
206,624 - +0.8
206,624 - +0.4
206,629 + -0.3
206,630 - -0.3
206,712 - +1.3
206,830 - Ga0059261_0218 0.18 -0.9
206,830 - Ga0059261_0218 0.18 -0.2
206,961 + Ga0059261_0218 0.39 -1.5
206,962 - Ga0059261_0218 0.39 +0.1
206,962 - Ga0059261_0218 0.39 -0.7
206,962 - Ga0059261_0218 0.39 -1.2
206,963 + Ga0059261_0218 0.39 -0.3
206,963 + Ga0059261_0218 0.39 -0.6
206,964 - Ga0059261_0218 0.39 -1.1
206,964 - Ga0059261_0218 0.39 -0.3
207,038 + Ga0059261_0218 0.50 +0.1
207,038 + Ga0059261_0218 0.50 +0.5
207,039 - Ga0059261_0218 0.51 +0.4
207,039 - Ga0059261_0218 0.51 -0.3
207,155 + Ga0059261_0218 0.68 -0.9
207,155 + Ga0059261_0218 0.68 -0.5
207,155 + Ga0059261_0218 0.68 +0.6
207,155 + Ga0059261_0218 0.68 -0.6
207,155 + Ga0059261_0218 0.68 +0.3
207,155 + Ga0059261_0218 0.68 +0.6
207,155 + +0.3
207,155 + +3.3
207,155 + Ga0059261_0218 0.68 -0.2
207,155 + Ga0059261_0218 0.68 -0.4
207,156 - Ga0059261_0218 0.69 +0.3
207,156 - Ga0059261_0218 0.69 +0.4
207,156 - Ga0059261_0218 0.69 -0.1
207,156 - Ga0059261_0218 0.69 +0.3
207,156 - Ga0059261_0218 0.69 -2.2
207,218 + Ga0059261_0218 0.78 +0.0
207,218 + Ga0059261_0218 0.78 -0.9
207,218 + Ga0059261_0218 0.78 -0.4
207,323 + -0.6
207,324 - -0.2
207,324 - +0.7
207,589 + Ga0059261_0219 0.23 -0.3
207,589 + Ga0059261_0219 0.23 -0.5
207,589 + Ga0059261_0219 0.23 +0.4
207,589 + Ga0059261_0219 0.23 -0.1
207,589 + Ga0059261_0219 0.23 +0.6
207,589 + Ga0059261_0219 0.23 -0.7
207,589 + Ga0059261_0219 0.23 -0.2
207,589 + Ga0059261_0219 0.23 +0.4
207,589 + Ga0059261_0219 0.23 -0.3
207,590 - Ga0059261_0219 0.23 +0.9
207,674 + Ga0059261_0219 0.31 +0.3
207,674 + +2.0
207,674 + Ga0059261_0219 0.31 +0.0
207,675 - Ga0059261_0219 0.31 +1.5
207,805 + Ga0059261_0219 0.44 +0.1
207,805 + Ga0059261_0219 0.44 +0.8
207,805 + Ga0059261_0219 0.44 +0.4
207,805 + Ga0059261_0219 0.44 +0.9
207,805 + Ga0059261_0219 0.44 -0.0
207,805 + Ga0059261_0219 0.44 +0.9
207,805 + Ga0059261_0219 0.44 +0.3
207,806 - Ga0059261_0219 0.44 +0.5
207,806 - Ga0059261_0219 0.44 -0.1
207,806 - Ga0059261_0219 0.44 +0.5
207,806 - Ga0059261_0219 0.44 +0.3
207,980 + Ga0059261_0219 0.61 -0.8
207,980 + Ga0059261_0219 0.61 +0.4
207,980 + Ga0059261_0219 0.61 -1.3
207,981 - Ga0059261_0219 0.61 +0.9
207,981 - Ga0059261_0219 0.61 -0.1
207,981 - Ga0059261_0219 0.61 +0.1
208,041 + Ga0059261_0219 0.67 +1.3
208,041 + Ga0059261_0219 0.67 +0.3
208,041 + Ga0059261_0219 0.67 +0.3
208,042 - Ga0059261_0219 0.67 -0.4
208,042 - Ga0059261_0219 0.67 +0.2
208,042 - Ga0059261_0219 0.67 +0.3
208,042 - Ga0059261_0219 0.67 +0.6
208,042 - Ga0059261_0219 0.67 +0.8
208,042 - Ga0059261_0219 0.67 +1.3
208,072 + Ga0059261_0219 0.70 +0.4
208,072 + Ga0059261_0219 0.70 +0.2
208,072 + Ga0059261_0219 0.70 -0.1
208,072 + Ga0059261_0219 0.70 +0.3
208,339 + -0.9
208,339 + -1.1
208,340 - +0.7
208,340 - +0.3
208,383 + +1.3
208,447 + -0.4
208,447 + +0.3
208,448 - +0.1
208,448 - -0.6
208,448 - +0.8
208,460 + +0.3
208,460 + +0.8
208,461 - +1.3
208,540 + Ga0059261_0220 0.10 +0.6
208,540 + Ga0059261_0220 0.10 -0.2
208,540 + Ga0059261_0220 0.10 +0.2
208,541 - Ga0059261_0220 0.10 -0.1
208,541 - Ga0059261_0220 0.10 +1.0
208,541 - Ga0059261_0220 0.10 +0.5
208,637 + Ga0059261_0220 0.17 +0.4
208,638 - Ga0059261_0220 0.17 -0.1
208,638 - Ga0059261_0220 0.17 +0.7
208,786 + Ga0059261_0220 0.28 -0.4
208,787 - Ga0059261_0220 0.28 -0.4
208,787 - Ga0059261_0220 0.28 +0.9
208,787 - Ga0059261_0220 0.28 -0.1
208,864 + Ga0059261_0220 0.33 +0.9
208,864 + Ga0059261_0220 0.33 -0.2
208,864 + Ga0059261_0220 0.33 +0.9
208,865 - Ga0059261_0220 0.34 +0.1
208,865 - Ga0059261_0220 0.34 +0.1
208,865 - Ga0059261_0220 0.34 +0.4
208,867 + Ga0059261_0220 0.34 -0.5
208,867 + Ga0059261_0220 0.34 +0.9
208,868 - Ga0059261_0220 0.34 -0.2
209,338 + Ga0059261_0220 0.68 +0.4
209,338 + Ga0059261_0220 0.68 +0.5
209,338 + Ga0059261_0220 0.68 -0.6

Or see this region's nucleotide sequence