Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0140

Experiment: 1-ethyl-3-methylimidazolium chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0139 and Ga0059261_0140 overlap by 25 nucleotidesGa0059261_0140 and Ga0059261_0141 are separated by 55 nucleotides Ga0059261_0139: Ga0059261_0139 - Signal transduction histidine kinase, nitrogen specific, at 132,844 to 133,956 _0139 Ga0059261_0140: Ga0059261_0140 - tRNA-U20-dihydrouridine synthase, at 133,932 to 134,957 _0140 Ga0059261_0141: Ga0059261_0141 - transcriptional regulator, LysR family, at 135,013 to 135,897 _0141 Position (kb) 133 134 135Strain fitness (log2 ratio) -2 -1 0 1 2at 132.934 kb on + strandat 132.934 kb on + strandat 132.935 kb on - strandat 132.935 kb on - strandat 132.935 kb on - strandat 133.118 kb on + strandat 133.119 kb on - strand, within Ga0059261_0139at 133.119 kb on - strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.319 kb on + strand, within Ga0059261_0139at 133.320 kb on - strand, within Ga0059261_0139at 133.320 kb on - strand, within Ga0059261_0139at 133.320 kb on - strand, within Ga0059261_0139at 133.320 kb on - strand, within Ga0059261_0139at 133.541 kb on - strand, within Ga0059261_0139at 133.742 kb on + strand, within Ga0059261_0139at 133.743 kb on - strand, within Ga0059261_0139at 133.764 kb on + strand, within Ga0059261_0139at 133.800 kb on + strand, within Ga0059261_0139at 133.800 kb on + strand, within Ga0059261_0139at 133.800 kb on + strandat 133.800 kb on + strand, within Ga0059261_0139at 133.801 kb on - strand, within Ga0059261_0139at 133.837 kb on + strand, within Ga0059261_0139at 133.837 kb on + strand, within Ga0059261_0139at 133.838 kb on - strand, within Ga0059261_0139at 133.956 kb on + strandat 133.956 kb on + strandat 133.956 kb on + strandat 133.957 kb on - strandat 133.957 kb on - strandat 133.957 kb on - strandat 133.957 kb on - strandat 133.957 kb on - strandat 133.990 kb on + strandat 133.990 kb on + strandat 133.990 kb on + strandat 133.991 kb on - strandat 133.991 kb on - strandat 133.991 kb on - strandat 133.991 kb on - strandat 133.991 kb on - strandat 133.991 kb on - strandat 133.991 kb on - strandat 134.084 kb on - strand, within Ga0059261_0140at 134.131 kb on + strand, within Ga0059261_0140at 134.131 kb on + strand, within Ga0059261_0140at 134.152 kb on + strand, within Ga0059261_0140at 134.153 kb on - strand, within Ga0059261_0140at 134.173 kb on + strand, within Ga0059261_0140at 134.173 kb on + strand, within Ga0059261_0140at 134.173 kb on + strand, within Ga0059261_0140at 134.174 kb on - strand, within Ga0059261_0140at 134.174 kb on - strand, within Ga0059261_0140at 134.257 kb on + strand, within Ga0059261_0140at 134.410 kb on + strand, within Ga0059261_0140at 134.410 kb on + strand, within Ga0059261_0140at 134.411 kb on - strand, within Ga0059261_0140at 134.411 kb on - strand, within Ga0059261_0140at 134.411 kb on - strand, within Ga0059261_0140at 134.411 kb on - strand, within Ga0059261_0140at 134.411 kb on - strand, within Ga0059261_0140at 134.624 kb on + strand, within Ga0059261_0140at 134.625 kb on - strand, within Ga0059261_0140at 134.625 kb on - strand, within Ga0059261_0140at 134.710 kb on + strand, within Ga0059261_0140at 134.711 kb on - strand, within Ga0059261_0140at 134.845 kb on + strand, within Ga0059261_0140at 134.845 kb on + strand, within Ga0059261_0140at 134.986 kb on + strandat 134.986 kb on + strandat 134.986 kb on + strandat 134.987 kb on - strandat 135.120 kb on - strand, within Ga0059261_0141at 135.323 kb on + strand, within Ga0059261_0141at 135.323 kb on + strand, within Ga0059261_0141at 135.324 kb on - strand, within Ga0059261_0141at 135.324 kb on - strand, within Ga0059261_0141at 135.324 kb on - strand, within Ga0059261_0141at 135.392 kb on + strand, within Ga0059261_0141at 135.392 kb on + strand, within Ga0059261_0141at 135.393 kb on - strand, within Ga0059261_0141at 135.393 kb on - strand, within Ga0059261_0141

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 10 mM
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132,934 + -2.1
132,934 + +0.6
132,935 - +0.2
132,935 - -0.0
132,935 - -0.2
133,118 + +0.7
133,119 - Ga0059261_0139 0.25 -0.4
133,119 - Ga0059261_0139 0.25 -1.6
133,319 + Ga0059261_0139 0.43 +1.1
133,319 + Ga0059261_0139 0.43 -2.2
133,319 + Ga0059261_0139 0.43 +2.6
133,319 + Ga0059261_0139 0.43 -0.4
133,319 + Ga0059261_0139 0.43 +0.1
133,319 + Ga0059261_0139 0.43 +0.5
133,319 + Ga0059261_0139 0.43 -0.0
133,319 + Ga0059261_0139 0.43 -1.3
133,319 + Ga0059261_0139 0.43 +0.7
133,319 + Ga0059261_0139 0.43 -0.9
133,320 - Ga0059261_0139 0.43 -1.0
133,320 - Ga0059261_0139 0.43 -0.5
133,320 - Ga0059261_0139 0.43 -0.3
133,320 - Ga0059261_0139 0.43 +0.1
133,541 - Ga0059261_0139 0.63 +0.4
133,742 + Ga0059261_0139 0.81 +1.1
133,743 - Ga0059261_0139 0.81 +1.7
133,764 + Ga0059261_0139 0.83 +0.3
133,800 + Ga0059261_0139 0.86 -0.1
133,800 + Ga0059261_0139 0.86 +0.4
133,800 + +0.3
133,800 + Ga0059261_0139 0.86 +0.4
133,801 - Ga0059261_0139 0.86 +0.5
133,837 + Ga0059261_0139 0.89 -1.3
133,837 + Ga0059261_0139 0.89 -0.0
133,838 - Ga0059261_0139 0.89 +1.2
133,956 + +0.8
133,956 + +0.1
133,956 + -0.9
133,957 - -0.7
133,957 - +0.8
133,957 - +0.7
133,957 - +1.4
133,957 - -1.5
133,990 + -1.8
133,990 + -0.6
133,990 + -1.6
133,991 - +0.5
133,991 - +0.4
133,991 - -0.9
133,991 - +1.7
133,991 - -0.7
133,991 - -0.0
133,991 - -0.5
134,084 - Ga0059261_0140 0.15 +0.4
134,131 + Ga0059261_0140 0.19 +0.1
134,131 + Ga0059261_0140 0.19 -0.5
134,152 + Ga0059261_0140 0.21 +0.3
134,153 - Ga0059261_0140 0.22 -0.2
134,173 + Ga0059261_0140 0.23 -0.7
134,173 + Ga0059261_0140 0.23 -0.4
134,173 + Ga0059261_0140 0.23 +1.0
134,174 - Ga0059261_0140 0.24 +0.3
134,174 - Ga0059261_0140 0.24 +0.5
134,257 + Ga0059261_0140 0.32 +0.7
134,410 + Ga0059261_0140 0.47 +0.4
134,410 + Ga0059261_0140 0.47 -0.1
134,411 - Ga0059261_0140 0.47 -0.1
134,411 - Ga0059261_0140 0.47 +0.3
134,411 - Ga0059261_0140 0.47 +0.0
134,411 - Ga0059261_0140 0.47 -0.1
134,411 - Ga0059261_0140 0.47 +0.3
134,624 + Ga0059261_0140 0.67 +0.5
134,625 - Ga0059261_0140 0.68 +0.8
134,625 - Ga0059261_0140 0.68 +0.8
134,710 + Ga0059261_0140 0.76 +0.4
134,711 - Ga0059261_0140 0.76 +0.2
134,845 + Ga0059261_0140 0.89 -0.1
134,845 + Ga0059261_0140 0.89 +0.6
134,986 + -0.6
134,986 + -0.3
134,986 + -0.1
134,987 - +0.7
135,120 - Ga0059261_0141 0.12 +0.4
135,323 + Ga0059261_0141 0.35 -0.0
135,323 + Ga0059261_0141 0.35 +0.0
135,324 - Ga0059261_0141 0.35 -2.2
135,324 - Ga0059261_0141 0.35 -0.2
135,324 - Ga0059261_0141 0.35 -0.3
135,392 + Ga0059261_0141 0.43 -1.1
135,392 + Ga0059261_0141 0.43 +0.2
135,393 - Ga0059261_0141 0.43 +0.3
135,393 - Ga0059261_0141 0.43 +0.5

Or see this region's nucleotide sequence