Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03752 and CCNA_03753 overlap by 4 nucleotides CCNA_03753 and CCNA_03754 overlap by 20 nucleotides CCNA_03754 and CCNA_03755 are separated by 119 nucleotides
CCNA_03752: CCNA_03752 - UTP-glucose-1-phosphate uridylyltransferase, at 3,921,686 to 3,922,582
_03752
CCNA_03753: CCNA_03753 - iron-sulfur cluster-binding protein, at 3,922,579 to 3,923,709
_03753
CCNA_03754: CCNA_03754 - FtsZ-binding protein FzlA, at 3,923,690 to 3,924,376
_03754
CCNA_03755: CCNA_03755 - bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase, at 3,924,496 to 3,925,947
_03755
Position (kb)
3922
3923
3924 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3921.584 kb on + strand at 3921.584 kb on + strand at 3921.584 kb on + strand at 3921.592 kb on - strand at 3921.592 kb on - strand at 3921.614 kb on + strand at 3921.615 kb on + strand at 3921.615 kb on + strand at 3921.622 kb on - strand at 3921.623 kb on - strand at 3921.639 kb on + strand at 3921.695 kb on + strand at 3922.558 kb on + strand at 3922.576 kb on + strand at 3922.601 kb on + strand at 3922.621 kb on + strand at 3922.634 kb on + strand at 3922.661 kb on + strand at 3922.663 kb on + strand at 3922.669 kb on - strand at 3922.710 kb on - strand, within CCNA_03753 at 3922.723 kb on + strand, within CCNA_03753 at 3922.723 kb on + strand, within CCNA_03753 at 3922.731 kb on - strand, within CCNA_03753 at 3922.739 kb on + strand, within CCNA_03753 at 3922.807 kb on - strand, within CCNA_03753 at 3922.870 kb on + strand, within CCNA_03753 at 3922.892 kb on + strand, within CCNA_03753 at 3922.901 kb on - strand, within CCNA_03753 at 3922.948 kb on - strand, within CCNA_03753 at 3922.958 kb on + strand, within CCNA_03753 at 3922.966 kb on - strand, within CCNA_03753 at 3922.972 kb on + strand, within CCNA_03753 at 3923.033 kb on + strand, within CCNA_03753 at 3923.033 kb on + strand, within CCNA_03753 at 3923.041 kb on - strand, within CCNA_03753 at 3923.071 kb on + strand, within CCNA_03753 at 3923.090 kb on - strand, within CCNA_03753 at 3923.145 kb on + strand, within CCNA_03753 at 3923.145 kb on + strand, within CCNA_03753 at 3923.146 kb on + strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.163 kb on - strand, within CCNA_03753 at 3923.163 kb on - strand, within CCNA_03753 at 3923.199 kb on + strand, within CCNA_03753 at 3923.227 kb on + strand, within CCNA_03753 at 3923.235 kb on - strand, within CCNA_03753 at 3923.235 kb on - strand, within CCNA_03753 at 3923.240 kb on - strand, within CCNA_03753 at 3923.279 kb on + strand, within CCNA_03753 at 3923.298 kb on + strand, within CCNA_03753 at 3923.306 kb on - strand, within CCNA_03753 at 3923.323 kb on + strand, within CCNA_03753 at 3923.332 kb on - strand, within CCNA_03753 at 3923.378 kb on - strand, within CCNA_03753 at 3923.443 kb on - strand, within CCNA_03753 at 3923.473 kb on - strand, within CCNA_03753 at 3923.486 kb on + strand, within CCNA_03753 at 3923.517 kb on + strand, within CCNA_03753 at 3923.517 kb on + strand, within CCNA_03753 at 3923.520 kb on - strand, within CCNA_03753 at 3923.525 kb on - strand, within CCNA_03753 at 3923.525 kb on - strand, within CCNA_03753 at 3923.525 kb on - strand, within CCNA_03753 at 3923.525 kb on - strand, within CCNA_03753 at 3923.525 kb on - strand, within CCNA_03753 at 3923.530 kb on - strand, within CCNA_03753 at 3923.535 kb on - strand, within CCNA_03753 at 3923.557 kb on - strand, within CCNA_03753 at 3923.584 kb on - strand, within CCNA_03753 at 3923.590 kb on - strand, within CCNA_03753 at 3923.597 kb on - strand at 3923.602 kb on + strand at 3923.622 kb on - strand at 3923.681 kb on + strand at 3924.400 kb on - strand at 3924.530 kb on + strand at 3924.532 kb on - strand at 3924.532 kb on - strand at 3924.532 kb on - strand at 3924.532 kb on - strand at 3924.537 kb on - strand at 3924.608 kb on + strand at 3924.676 kb on - strand, within CCNA_03755
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 3,921,584 + +0.5 3,921,584 + -0.6 3,921,584 + -1.4 3,921,592 - +0.8 3,921,592 - +1.3 3,921,614 + -0.5 3,921,615 + -0.5 3,921,615 + -1.4 3,921,622 - -0.7 3,921,623 - -1.5 3,921,639 + +1.8 3,921,695 + -1.1 3,922,558 + +0.9 3,922,576 + +0.8 3,922,601 + +0.6 3,922,621 + +2.3 3,922,634 + +2.3 3,922,661 + +2.1 3,922,663 + +0.8 3,922,669 - +0.0 3,922,710 - CCNA_03753 0.12 -0.3 3,922,723 + CCNA_03753 0.13 -0.6 3,922,723 + CCNA_03753 0.13 -1.2 3,922,731 - CCNA_03753 0.13 -0.2 3,922,739 + CCNA_03753 0.14 -0.1 3,922,807 - CCNA_03753 0.20 -0.9 3,922,870 + CCNA_03753 0.26 -0.3 3,922,892 + CCNA_03753 0.28 +1.4 3,922,901 - CCNA_03753 0.28 +0.5 3,922,948 - CCNA_03753 0.33 +0.7 3,922,958 + CCNA_03753 0.34 -0.7 3,922,966 - CCNA_03753 0.34 -1.2 3,922,972 + CCNA_03753 0.35 +0.1 3,923,033 + CCNA_03753 0.40 -0.7 3,923,033 + CCNA_03753 0.40 -0.1 3,923,041 - CCNA_03753 0.41 +0.5 3,923,071 + CCNA_03753 0.44 -0.1 3,923,090 - CCNA_03753 0.45 -1.2 3,923,145 + CCNA_03753 0.50 -0.6 3,923,145 + CCNA_03753 0.50 -1.4 3,923,146 + CCNA_03753 0.50 -0.4 3,923,153 - CCNA_03753 0.51 -0.0 3,923,153 - CCNA_03753 0.51 -0.4 3,923,153 - CCNA_03753 0.51 +0.5 3,923,153 - CCNA_03753 0.51 +0.9 3,923,153 - CCNA_03753 0.51 +0.3 3,923,153 - CCNA_03753 0.51 +0.0 3,923,163 - CCNA_03753 0.52 +1.1 3,923,163 - CCNA_03753 0.52 +0.3 3,923,199 + CCNA_03753 0.55 -2.1 3,923,227 + CCNA_03753 0.57 +0.9 3,923,235 - CCNA_03753 0.58 -0.2 3,923,235 - CCNA_03753 0.58 +0.5 3,923,240 - CCNA_03753 0.58 +0.2 3,923,279 + CCNA_03753 0.62 -0.5 3,923,298 + CCNA_03753 0.64 +0.5 3,923,306 - CCNA_03753 0.64 +0.8 3,923,323 + CCNA_03753 0.66 +0.7 3,923,332 - CCNA_03753 0.67 +0.6 3,923,378 - CCNA_03753 0.71 -0.7 3,923,443 - CCNA_03753 0.76 +0.8 3,923,473 - CCNA_03753 0.79 -0.3 3,923,486 + CCNA_03753 0.80 -0.7 3,923,517 + CCNA_03753 0.83 -1.4 3,923,517 + CCNA_03753 0.83 -1.0 3,923,520 - CCNA_03753 0.83 +0.7 3,923,525 - CCNA_03753 0.84 -0.3 3,923,525 - CCNA_03753 0.84 +0.2 3,923,525 - CCNA_03753 0.84 +1.6 3,923,525 - CCNA_03753 0.84 +0.1 3,923,525 - CCNA_03753 0.84 +0.7 3,923,530 - CCNA_03753 0.84 -1.1 3,923,535 - CCNA_03753 0.85 +0.6 3,923,557 - CCNA_03753 0.86 -0.4 3,923,584 - CCNA_03753 0.89 +1.3 3,923,590 - CCNA_03753 0.89 +1.0 3,923,597 - -0.6 3,923,602 + -0.8 3,923,622 - +0.6 3,923,681 + -0.5 3,924,400 - +1.5 3,924,530 + -1.7 3,924,532 - -0.5 3,924,532 - +1.4 3,924,532 - -0.2 3,924,532 - +0.8 3,924,537 - -2.7 3,924,608 + -1.8 3,924,676 - CCNA_03755 0.12 -1.3
Or see this region's nucleotide sequence