Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02738

Experiment: L-Proline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02736 and CCNA_02737 are separated by 8 nucleotidesCCNA_02737 and CCNA_02738 are separated by 68 nucleotidesCCNA_02738 and CCNA_03974 overlap by 330 nucleotidesCCNA_03974 and CCNA_02739 are separated by 73 nucleotides CCNA_02736: CCNA_02736 - nitroreductase family, at 2,897,850 to 2,898,464 _02736 CCNA_02737: CCNA_02737 - queuosine biosynthesis protein QueF, at 2,898,473 to 2,898,928 _02737 CCNA_02738: CCNA_02738 - 3-ketoacyl-(acyl-carrier-protein) reductase, at 2,898,997 to 2,899,818 _02738 CCNA_03974: CCNA_03974 - hypothetical protein, at 2,899,489 to 2,899,896 _03974 CCNA_02739: CCNA_02739 - transposase, at 2,899,970 to 2,900,950 _02739 Position (kb) 2898 2899 2900Strain fitness (log2 ratio) -2 -1 0 1 2at 2898.038 kb on + strand, within CCNA_02736at 2898.055 kb on + strand, within CCNA_02736at 2898.060 kb on + strand, within CCNA_02736at 2898.063 kb on - strand, within CCNA_02736at 2898.068 kb on - strand, within CCNA_02736at 2898.082 kb on - strand, within CCNA_02736at 2898.139 kb on - strand, within CCNA_02736at 2898.145 kb on - strand, within CCNA_02736at 2898.160 kb on - strand, within CCNA_02736at 2898.173 kb on + strand, within CCNA_02736at 2898.228 kb on - strand, within CCNA_02736at 2898.228 kb on - strand, within CCNA_02736at 2898.241 kb on + strand, within CCNA_02736at 2898.269 kb on + strand, within CCNA_02736at 2898.279 kb on + strand, within CCNA_02736at 2898.279 kb on + strand, within CCNA_02736at 2898.284 kb on + strand, within CCNA_02736at 2898.287 kb on - strand, within CCNA_02736at 2898.292 kb on - strand, within CCNA_02736at 2898.319 kb on + strand, within CCNA_02736at 2898.319 kb on + strand, within CCNA_02736at 2898.319 kb on + strand, within CCNA_02736at 2898.319 kb on + strand, within CCNA_02736at 2898.319 kb on + strand, within CCNA_02736at 2898.319 kb on + strand, within CCNA_02736at 2898.319 kb on + strand, within CCNA_02736at 2898.319 kb on + strand, within CCNA_02736at 2898.319 kb on + strand, within CCNA_02736at 2898.319 kb on + strand, within CCNA_02736at 2898.319 kb on + strand, within CCNA_02736at 2898.319 kb on + strand, within CCNA_02736at 2898.319 kb on + strand, within CCNA_02736at 2898.319 kb on + strand, within CCNA_02736at 2898.319 kb on + strand, within CCNA_02736at 2898.319 kb on + strand, within CCNA_02736at 2898.319 kb on + strand, within CCNA_02736at 2898.319 kb on + strand, within CCNA_02736at 2898.319 kb on + strand, within CCNA_02736at 2898.327 kb on - strand, within CCNA_02736at 2898.327 kb on - strand, within CCNA_02736at 2898.327 kb on - strand, within CCNA_02736at 2898.327 kb on - strand, within CCNA_02736at 2898.327 kb on - strandat 2898.327 kb on - strand, within CCNA_02736at 2898.327 kb on - strand, within CCNA_02736at 2898.327 kb on - strand, within CCNA_02736at 2898.327 kb on - strand, within CCNA_02736at 2898.327 kb on - strand, within CCNA_02736at 2898.327 kb on - strand, within CCNA_02736at 2898.327 kb on - strand, within CCNA_02736at 2898.327 kb on - strand, within CCNA_02736at 2898.327 kb on - strand, within CCNA_02736at 2898.327 kb on - strand, within CCNA_02736at 2898.327 kb on - strand, within CCNA_02736at 2898.342 kb on + strand, within CCNA_02736at 2898.383 kb on - strand, within CCNA_02736at 2898.449 kb on + strandat 2898.481 kb on + strandat 2898.514 kb on + strandat 2898.637 kb on + strand, within CCNA_02737at 2898.741 kb on - strand, within CCNA_02737at 2898.752 kb on - strand, within CCNA_02737at 2898.759 kb on + strand, within CCNA_02737at 2898.777 kb on - strand, within CCNA_02737at 2898.797 kb on - strand, within CCNA_02737at 2898.826 kb on + strand, within CCNA_02737at 2898.862 kb on - strand, within CCNA_02737at 2898.936 kb on + strandat 2898.936 kb on + strandat 2898.936 kb on + strandat 2898.944 kb on - strandat 2898.944 kb on - strandat 2898.944 kb on - strandat 2898.979 kb on + strandat 2899.040 kb on + strandat 2899.069 kb on + strandat 2899.069 kb on + strandat 2899.069 kb on + strandat 2899.077 kb on - strandat 2899.109 kb on + strand, within CCNA_02738at 2899.109 kb on + strand, within CCNA_02738at 2899.109 kb on + strand, within CCNA_02738at 2899.163 kb on + strand, within CCNA_02738at 2899.179 kb on + strand, within CCNA_02738at 2899.181 kb on - strand, within CCNA_02738at 2899.216 kb on - strand, within CCNA_02738at 2899.221 kb on - strand, within CCNA_02738at 2899.255 kb on + strand, within CCNA_02738at 2899.290 kb on - strand, within CCNA_02738at 2899.325 kb on - strand, within CCNA_02738at 2899.335 kb on - strand, within CCNA_02738at 2899.362 kb on + strand, within CCNA_02738at 2899.362 kb on + strand, within CCNA_02738at 2899.362 kb on + strand, within CCNA_02738at 2899.370 kb on - strand, within CCNA_02738at 2899.380 kb on + strand, within CCNA_02738at 2899.415 kb on - strand, within CCNA_02738at 2899.417 kb on + strand, within CCNA_02738at 2899.419 kb on + strand, within CCNA_02738at 2899.419 kb on + strand, within CCNA_02738at 2899.427 kb on - strand, within CCNA_02738at 2899.427 kb on - strand, within CCNA_02738at 2899.427 kb on - strand, within CCNA_02738at 2899.449 kb on + strand, within CCNA_02738at 2899.450 kb on + strand, within CCNA_02738at 2899.450 kb on + strand, within CCNA_02738at 2899.493 kb on - strandat 2899.497 kb on + strandat 2899.497 kb on + strandat 2899.505 kb on - strandat 2899.505 kb on - strandat 2899.505 kb on - strandat 2899.507 kb on + strandat 2899.561 kb on - strandat 2899.580 kb on - strandat 2899.620 kb on + strandat 2899.683 kb on - strandat 2899.685 kb on - strandat 2899.685 kb on - strandat 2899.696 kb on + strandat 2899.757 kb on + strandat 2899.765 kb on + strandat 2899.814 kb on + strandat 2899.852 kb on + strand, within CCNA_03974at 2899.902 kb on - strandat 2899.902 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
remove
2,898,038 + CCNA_02736 0.31 +2.2
2,898,055 + CCNA_02736 0.33 +1.3
2,898,060 + CCNA_02736 0.34 +1.9
2,898,063 - CCNA_02736 0.35 -0.5
2,898,068 - CCNA_02736 0.35 -1.4
2,898,082 - CCNA_02736 0.38 -0.2
2,898,139 - CCNA_02736 0.47 +0.2
2,898,145 - CCNA_02736 0.48 +1.0
2,898,160 - CCNA_02736 0.50 +0.2
2,898,173 + CCNA_02736 0.53 +0.6
2,898,228 - CCNA_02736 0.61 +1.8
2,898,228 - CCNA_02736 0.61 +0.8
2,898,241 + CCNA_02736 0.64 +0.6
2,898,269 + CCNA_02736 0.68 +1.4
2,898,279 + CCNA_02736 0.70 +1.3
2,898,279 + CCNA_02736 0.70 -1.6
2,898,284 + CCNA_02736 0.71 +1.2
2,898,287 - CCNA_02736 0.71 +1.1
2,898,292 - CCNA_02736 0.72 +1.0
2,898,319 + CCNA_02736 0.76 +1.4
2,898,319 + CCNA_02736 0.76 +0.7
2,898,319 + CCNA_02736 0.76 +0.2
2,898,319 + CCNA_02736 0.76 +1.0
2,898,319 + CCNA_02736 0.76 +1.5
2,898,319 + CCNA_02736 0.76 +0.3
2,898,319 + CCNA_02736 0.76 +0.3
2,898,319 + CCNA_02736 0.76 +0.3
2,898,319 + CCNA_02736 0.76 +0.9
2,898,319 + CCNA_02736 0.76 -0.8
2,898,319 + CCNA_02736 0.76 +1.0
2,898,319 + CCNA_02736 0.76 +0.0
2,898,319 + CCNA_02736 0.76 +0.7
2,898,319 + CCNA_02736 0.76 +1.0
2,898,319 + CCNA_02736 0.76 +1.0
2,898,319 + CCNA_02736 0.76 +1.3
2,898,319 + CCNA_02736 0.76 -0.1
2,898,319 + CCNA_02736 0.76 +1.1
2,898,319 + CCNA_02736 0.76 +0.8
2,898,327 - CCNA_02736 0.78 +0.3
2,898,327 - CCNA_02736 0.78 -2.3
2,898,327 - CCNA_02736 0.78 +1.4
2,898,327 - CCNA_02736 0.78 +1.1
2,898,327 - +0.6
2,898,327 - CCNA_02736 0.78 +0.7
2,898,327 - CCNA_02736 0.78 +0.9
2,898,327 - CCNA_02736 0.78 +1.1
2,898,327 - CCNA_02736 0.78 +0.7
2,898,327 - CCNA_02736 0.78 +1.0
2,898,327 - CCNA_02736 0.78 +0.4
2,898,327 - CCNA_02736 0.78 +0.6
2,898,327 - CCNA_02736 0.78 -0.6
2,898,327 - CCNA_02736 0.78 +1.4
2,898,327 - CCNA_02736 0.78 +1.8
2,898,327 - CCNA_02736 0.78 +0.9
2,898,342 + CCNA_02736 0.80 +1.0
2,898,383 - CCNA_02736 0.87 +0.3
2,898,449 + +1.6
2,898,481 + +0.1
2,898,514 + -0.0
2,898,637 + CCNA_02737 0.36 -1.7
2,898,741 - CCNA_02737 0.59 +0.4
2,898,752 - CCNA_02737 0.61 -0.1
2,898,759 + CCNA_02737 0.63 +1.0
2,898,777 - CCNA_02737 0.67 +0.7
2,898,797 - CCNA_02737 0.71 -0.6
2,898,826 + CCNA_02737 0.77 -1.1
2,898,862 - CCNA_02737 0.85 +1.7
2,898,936 + -0.3
2,898,936 + -0.8
2,898,936 + +1.6
2,898,944 - +1.9
2,898,944 - +1.5
2,898,944 - +1.2
2,898,979 + -1.0
2,899,040 + +1.1
2,899,069 + +0.8
2,899,069 + +2.1
2,899,069 + +1.7
2,899,077 - -0.7
2,899,109 + CCNA_02738 0.14 -0.3
2,899,109 + CCNA_02738 0.14 -0.4
2,899,109 + CCNA_02738 0.14 +0.2
2,899,163 + CCNA_02738 0.20 +0.4
2,899,179 + CCNA_02738 0.22 -0.3
2,899,181 - CCNA_02738 0.22 +0.7
2,899,216 - CCNA_02738 0.27 +1.4
2,899,221 - CCNA_02738 0.27 +1.5
2,899,255 + CCNA_02738 0.31 +1.1
2,899,290 - CCNA_02738 0.36 +0.6
2,899,325 - CCNA_02738 0.40 +1.2
2,899,335 - CCNA_02738 0.41 +1.2
2,899,362 + CCNA_02738 0.44 -0.9
2,899,362 + CCNA_02738 0.44 +0.3
2,899,362 + CCNA_02738 0.44 +1.1
2,899,370 - CCNA_02738 0.45 +1.4
2,899,380 + CCNA_02738 0.47 -0.5
2,899,415 - CCNA_02738 0.51 +1.3
2,899,417 + CCNA_02738 0.51 -0.8
2,899,419 + CCNA_02738 0.51 +0.6
2,899,419 + CCNA_02738 0.51 +0.2
2,899,427 - CCNA_02738 0.52 +1.4
2,899,427 - CCNA_02738 0.52 -0.7
2,899,427 - CCNA_02738 0.52 +0.7
2,899,449 + CCNA_02738 0.55 -0.6
2,899,450 + CCNA_02738 0.55 +0.4
2,899,450 + CCNA_02738 0.55 +1.2
2,899,493 - +1.2
2,899,497 + +1.7
2,899,497 + +0.6
2,899,505 - +1.1
2,899,505 - +1.4
2,899,505 - +1.4
2,899,507 + +1.4
2,899,561 - +0.4
2,899,580 - +1.1
2,899,620 + +0.3
2,899,683 - +0.9
2,899,685 - +1.9
2,899,685 - +1.0
2,899,696 + +0.2
2,899,757 + +1.2
2,899,765 + -0.2
2,899,814 + +0.3
2,899,852 + CCNA_03974 0.89 -0.5
2,899,902 - +1.6
2,899,902 - +0.7

Or see this region's nucleotide sequence