Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01495 and CCNA_01496 are separated by 61 nucleotides CCNA_01496 and CCNA_01497 are separated by 2 nucleotides
CCNA_01495: CCNA_01495 - deoxyribodipyrimidine photolyase, at 1,604,575 to 1,606,026
_01495
CCNA_01496: CCNA_01496 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 1,606,088 to 1,606,951
_01496
CCNA_01497: CCNA_01497 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 1,606,954 to 1,607,955
_01497
Position (kb)
1606
1607 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1605.106 kb on + strand, within CCNA_01495 at 1605.106 kb on + strand, within CCNA_01495 at 1605.106 kb on + strand, within CCNA_01495 at 1605.114 kb on - strand, within CCNA_01495 at 1605.129 kb on - strand, within CCNA_01495 at 1605.202 kb on - strand, within CCNA_01495 at 1605.204 kb on + strand, within CCNA_01495 at 1605.207 kb on - strand, within CCNA_01495 at 1605.222 kb on + strand, within CCNA_01495 at 1605.227 kb on + strand, within CCNA_01495 at 1605.235 kb on - strand, within CCNA_01495 at 1605.237 kb on + strand, within CCNA_01495 at 1605.237 kb on + strand, within CCNA_01495 at 1605.237 kb on + strand, within CCNA_01495 at 1605.240 kb on - strand, within CCNA_01495 at 1605.330 kb on - strand, within CCNA_01495 at 1605.347 kb on + strand, within CCNA_01495 at 1605.347 kb on + strand, within CCNA_01495 at 1605.360 kb on + strand, within CCNA_01495 at 1605.390 kb on + strand, within CCNA_01495 at 1605.390 kb on + strand, within CCNA_01495 at 1605.398 kb on + strand, within CCNA_01495 at 1605.399 kb on - strand, within CCNA_01495 at 1605.407 kb on - strand, within CCNA_01495 at 1605.416 kb on - strand, within CCNA_01495 at 1605.429 kb on + strand, within CCNA_01495 at 1605.452 kb on - strand, within CCNA_01495 at 1605.468 kb on - strand, within CCNA_01495 at 1605.511 kb on + strand, within CCNA_01495 at 1605.516 kb on + strand, within CCNA_01495 at 1605.552 kb on + strand, within CCNA_01495 at 1605.552 kb on - strand, within CCNA_01495 at 1605.559 kb on + strand, within CCNA_01495 at 1605.564 kb on + strand, within CCNA_01495 at 1605.567 kb on - strand, within CCNA_01495 at 1605.583 kb on + strand, within CCNA_01495 at 1605.584 kb on + strand, within CCNA_01495 at 1605.584 kb on + strand, within CCNA_01495 at 1605.584 kb on + strand, within CCNA_01495 at 1605.597 kb on - strand, within CCNA_01495 at 1605.603 kb on - strand, within CCNA_01495 at 1605.658 kb on - strand, within CCNA_01495 at 1605.660 kb on - strand, within CCNA_01495 at 1605.674 kb on + strand, within CCNA_01495 at 1605.682 kb on - strand, within CCNA_01495 at 1605.697 kb on + strand, within CCNA_01495 at 1605.697 kb on + strand, within CCNA_01495 at 1605.746 kb on - strand, within CCNA_01495 at 1605.755 kb on - strand, within CCNA_01495 at 1605.779 kb on - strand, within CCNA_01495 at 1605.785 kb on - strand, within CCNA_01495 at 1605.792 kb on + strand, within CCNA_01495 at 1605.799 kb on - strand, within CCNA_01495 at 1605.812 kb on - strand, within CCNA_01495 at 1605.820 kb on - strand, within CCNA_01495 at 1605.838 kb on - strand, within CCNA_01495 at 1605.902 kb on + strand at 1605.918 kb on - strand at 1605.920 kb on + strand at 1605.920 kb on + strand at 1605.928 kb on - strand at 1605.949 kb on + strand at 1605.949 kb on + strand at 1605.949 kb on + strand at 1605.949 kb on + strand at 1605.957 kb on - strand at 1605.957 kb on - strand at 1605.957 kb on - strand at 1606.002 kb on + strand at 1606.028 kb on + strand at 1606.028 kb on + strand at 1606.034 kb on + strand at 1606.036 kb on - strand at 1606.064 kb on + strand at 1606.096 kb on + strand at 1606.936 kb on + strand at 1606.944 kb on - strand at 1606.969 kb on + strand at 1606.969 kb on + strand at 1607.228 kb on + strand, within CCNA_01497 at 1607.228 kb on + strand, within CCNA_01497 at 1607.424 kb on + strand, within CCNA_01497 at 1607.424 kb on + strand, within CCNA_01497 at 1607.424 kb on + strand, within CCNA_01497 at 1607.542 kb on + strand, within CCNA_01497 at 1607.701 kb on + strand, within CCNA_01497 at 1607.842 kb on + strand, within CCNA_01497 at 1607.845 kb on + strand, within CCNA_01497
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 1,605,106 + CCNA_01495 0.37 -0.6 1,605,106 + CCNA_01495 0.37 -0.2 1,605,106 + CCNA_01495 0.37 +0.2 1,605,114 - CCNA_01495 0.37 -0.3 1,605,129 - CCNA_01495 0.38 +0.0 1,605,202 - CCNA_01495 0.43 +0.5 1,605,204 + CCNA_01495 0.43 -1.4 1,605,207 - CCNA_01495 0.44 -1.5 1,605,222 + CCNA_01495 0.45 +0.9 1,605,227 + CCNA_01495 0.45 -0.6 1,605,235 - CCNA_01495 0.45 +0.2 1,605,237 + CCNA_01495 0.46 -1.0 1,605,237 + CCNA_01495 0.46 -0.6 1,605,237 + CCNA_01495 0.46 +0.8 1,605,240 - CCNA_01495 0.46 -0.1 1,605,330 - CCNA_01495 0.52 -2.3 1,605,347 + CCNA_01495 0.53 -1.8 1,605,347 + CCNA_01495 0.53 -0.3 1,605,360 + CCNA_01495 0.54 -1.7 1,605,390 + CCNA_01495 0.56 -0.1 1,605,390 + CCNA_01495 0.56 -1.3 1,605,398 + CCNA_01495 0.57 -0.9 1,605,399 - CCNA_01495 0.57 +0.2 1,605,407 - CCNA_01495 0.57 -2.2 1,605,416 - CCNA_01495 0.58 -0.6 1,605,429 + CCNA_01495 0.59 -2.9 1,605,452 - CCNA_01495 0.60 -0.7 1,605,468 - CCNA_01495 0.62 -0.2 1,605,511 + CCNA_01495 0.64 -0.4 1,605,516 + CCNA_01495 0.65 -2.1 1,605,552 + CCNA_01495 0.67 -0.7 1,605,552 - CCNA_01495 0.67 +0.1 1,605,559 + CCNA_01495 0.68 -2.7 1,605,564 + CCNA_01495 0.68 +0.5 1,605,567 - CCNA_01495 0.68 -0.3 1,605,583 + CCNA_01495 0.69 +2.0 1,605,584 + CCNA_01495 0.69 +2.0 1,605,584 + CCNA_01495 0.69 +1.8 1,605,584 + CCNA_01495 0.69 +1.6 1,605,597 - CCNA_01495 0.70 -0.3 1,605,603 - CCNA_01495 0.71 +1.5 1,605,658 - CCNA_01495 0.75 -1.6 1,605,660 - CCNA_01495 0.75 -0.1 1,605,674 + CCNA_01495 0.76 -0.1 1,605,682 - CCNA_01495 0.76 -0.6 1,605,697 + CCNA_01495 0.77 -1.3 1,605,697 + CCNA_01495 0.77 -1.3 1,605,746 - CCNA_01495 0.81 +0.9 1,605,755 - CCNA_01495 0.81 -0.3 1,605,779 - CCNA_01495 0.83 -0.7 1,605,785 - CCNA_01495 0.83 -2.4 1,605,792 + CCNA_01495 0.84 -1.7 1,605,799 - CCNA_01495 0.84 +1.8 1,605,812 - CCNA_01495 0.85 +2.1 1,605,820 - CCNA_01495 0.86 +1.2 1,605,838 - CCNA_01495 0.87 -0.7 1,605,902 + -0.3 1,605,918 - -0.1 1,605,920 + -0.3 1,605,920 + -1.8 1,605,928 - -1.7 1,605,949 + +0.1 1,605,949 + -0.5 1,605,949 + -0.1 1,605,949 + -0.6 1,605,957 - -1.8 1,605,957 - -1.7 1,605,957 - -1.8 1,606,002 + +0.2 1,606,028 + +1.7 1,606,028 + -1.0 1,606,034 + +0.8 1,606,036 - -0.5 1,606,064 + -0.4 1,606,096 + -0.4 1,606,936 + +0.3 1,606,944 - -0.3 1,606,969 + -1.5 1,606,969 + -1.0 1,607,228 + CCNA_01497 0.27 -0.7 1,607,228 + CCNA_01497 0.27 -1.1 1,607,424 + CCNA_01497 0.47 +0.9 1,607,424 + CCNA_01497 0.47 -1.7 1,607,424 + CCNA_01497 0.47 -1.7 1,607,542 + CCNA_01497 0.59 -1.7 1,607,701 + CCNA_01497 0.75 -1.3 1,607,842 + CCNA_01497 0.89 -1.2 1,607,845 + CCNA_01497 0.89 +0.0
Or see this region's nucleotide sequence