Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01496

Experiment: L-Proline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_01495 and CCNA_01496 are separated by 61 nucleotidesCCNA_01496 and CCNA_01497 are separated by 2 nucleotides CCNA_01495: CCNA_01495 - deoxyribodipyrimidine photolyase, at 1,604,575 to 1,606,026 _01495 CCNA_01496: CCNA_01496 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 1,606,088 to 1,606,951 _01496 CCNA_01497: CCNA_01497 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 1,606,954 to 1,607,955 _01497 Position (kb) 1606 1607Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1605.106 kb on + strand, within CCNA_01495at 1605.106 kb on + strand, within CCNA_01495at 1605.106 kb on + strand, within CCNA_01495at 1605.114 kb on - strand, within CCNA_01495at 1605.129 kb on - strand, within CCNA_01495at 1605.202 kb on - strand, within CCNA_01495at 1605.204 kb on + strand, within CCNA_01495at 1605.207 kb on - strand, within CCNA_01495at 1605.222 kb on + strand, within CCNA_01495at 1605.227 kb on + strand, within CCNA_01495at 1605.235 kb on - strand, within CCNA_01495at 1605.237 kb on + strand, within CCNA_01495at 1605.237 kb on + strand, within CCNA_01495at 1605.237 kb on + strand, within CCNA_01495at 1605.240 kb on - strand, within CCNA_01495at 1605.330 kb on - strand, within CCNA_01495at 1605.347 kb on + strand, within CCNA_01495at 1605.347 kb on + strand, within CCNA_01495at 1605.360 kb on + strand, within CCNA_01495at 1605.390 kb on + strand, within CCNA_01495at 1605.390 kb on + strand, within CCNA_01495at 1605.398 kb on + strand, within CCNA_01495at 1605.399 kb on - strand, within CCNA_01495at 1605.407 kb on - strand, within CCNA_01495at 1605.416 kb on - strand, within CCNA_01495at 1605.429 kb on + strand, within CCNA_01495at 1605.452 kb on - strand, within CCNA_01495at 1605.468 kb on - strand, within CCNA_01495at 1605.511 kb on + strand, within CCNA_01495at 1605.516 kb on + strand, within CCNA_01495at 1605.552 kb on + strand, within CCNA_01495at 1605.552 kb on - strand, within CCNA_01495at 1605.559 kb on + strand, within CCNA_01495at 1605.564 kb on + strand, within CCNA_01495at 1605.567 kb on - strand, within CCNA_01495at 1605.583 kb on + strand, within CCNA_01495at 1605.584 kb on + strand, within CCNA_01495at 1605.584 kb on + strand, within CCNA_01495at 1605.584 kb on + strand, within CCNA_01495at 1605.597 kb on - strand, within CCNA_01495at 1605.603 kb on - strand, within CCNA_01495at 1605.658 kb on - strand, within CCNA_01495at 1605.660 kb on - strand, within CCNA_01495at 1605.674 kb on + strand, within CCNA_01495at 1605.682 kb on - strand, within CCNA_01495at 1605.697 kb on + strand, within CCNA_01495at 1605.697 kb on + strand, within CCNA_01495at 1605.746 kb on - strand, within CCNA_01495at 1605.755 kb on - strand, within CCNA_01495at 1605.779 kb on - strand, within CCNA_01495at 1605.785 kb on - strand, within CCNA_01495at 1605.792 kb on + strand, within CCNA_01495at 1605.799 kb on - strand, within CCNA_01495at 1605.812 kb on - strand, within CCNA_01495at 1605.820 kb on - strand, within CCNA_01495at 1605.838 kb on - strand, within CCNA_01495at 1605.902 kb on + strandat 1605.918 kb on - strandat 1605.920 kb on + strandat 1605.920 kb on + strandat 1605.928 kb on - strandat 1605.949 kb on + strandat 1605.949 kb on + strandat 1605.949 kb on + strandat 1605.949 kb on + strandat 1605.957 kb on - strandat 1605.957 kb on - strandat 1605.957 kb on - strandat 1606.002 kb on + strandat 1606.028 kb on + strandat 1606.028 kb on + strandat 1606.034 kb on + strandat 1606.036 kb on - strandat 1606.064 kb on + strandat 1606.096 kb on + strandat 1606.936 kb on + strandat 1606.944 kb on - strandat 1606.969 kb on + strandat 1606.969 kb on + strandat 1607.228 kb on + strand, within CCNA_01497at 1607.228 kb on + strand, within CCNA_01497at 1607.424 kb on + strand, within CCNA_01497at 1607.424 kb on + strand, within CCNA_01497at 1607.424 kb on + strand, within CCNA_01497at 1607.542 kb on + strand, within CCNA_01497at 1607.701 kb on + strand, within CCNA_01497at 1607.842 kb on + strand, within CCNA_01497at 1607.845 kb on + strand, within CCNA_01497

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
remove
1,605,106 + CCNA_01495 0.37 -0.6
1,605,106 + CCNA_01495 0.37 -0.2
1,605,106 + CCNA_01495 0.37 +0.2
1,605,114 - CCNA_01495 0.37 -0.3
1,605,129 - CCNA_01495 0.38 +0.0
1,605,202 - CCNA_01495 0.43 +0.5
1,605,204 + CCNA_01495 0.43 -1.4
1,605,207 - CCNA_01495 0.44 -1.5
1,605,222 + CCNA_01495 0.45 +0.9
1,605,227 + CCNA_01495 0.45 -0.6
1,605,235 - CCNA_01495 0.45 +0.2
1,605,237 + CCNA_01495 0.46 -1.0
1,605,237 + CCNA_01495 0.46 -0.6
1,605,237 + CCNA_01495 0.46 +0.8
1,605,240 - CCNA_01495 0.46 -0.1
1,605,330 - CCNA_01495 0.52 -2.3
1,605,347 + CCNA_01495 0.53 -1.8
1,605,347 + CCNA_01495 0.53 -0.3
1,605,360 + CCNA_01495 0.54 -1.7
1,605,390 + CCNA_01495 0.56 -0.1
1,605,390 + CCNA_01495 0.56 -1.3
1,605,398 + CCNA_01495 0.57 -0.9
1,605,399 - CCNA_01495 0.57 +0.2
1,605,407 - CCNA_01495 0.57 -2.2
1,605,416 - CCNA_01495 0.58 -0.6
1,605,429 + CCNA_01495 0.59 -2.9
1,605,452 - CCNA_01495 0.60 -0.7
1,605,468 - CCNA_01495 0.62 -0.2
1,605,511 + CCNA_01495 0.64 -0.4
1,605,516 + CCNA_01495 0.65 -2.1
1,605,552 + CCNA_01495 0.67 -0.7
1,605,552 - CCNA_01495 0.67 +0.1
1,605,559 + CCNA_01495 0.68 -2.7
1,605,564 + CCNA_01495 0.68 +0.5
1,605,567 - CCNA_01495 0.68 -0.3
1,605,583 + CCNA_01495 0.69 +2.0
1,605,584 + CCNA_01495 0.69 +2.0
1,605,584 + CCNA_01495 0.69 +1.8
1,605,584 + CCNA_01495 0.69 +1.6
1,605,597 - CCNA_01495 0.70 -0.3
1,605,603 - CCNA_01495 0.71 +1.5
1,605,658 - CCNA_01495 0.75 -1.6
1,605,660 - CCNA_01495 0.75 -0.1
1,605,674 + CCNA_01495 0.76 -0.1
1,605,682 - CCNA_01495 0.76 -0.6
1,605,697 + CCNA_01495 0.77 -1.3
1,605,697 + CCNA_01495 0.77 -1.3
1,605,746 - CCNA_01495 0.81 +0.9
1,605,755 - CCNA_01495 0.81 -0.3
1,605,779 - CCNA_01495 0.83 -0.7
1,605,785 - CCNA_01495 0.83 -2.4
1,605,792 + CCNA_01495 0.84 -1.7
1,605,799 - CCNA_01495 0.84 +1.8
1,605,812 - CCNA_01495 0.85 +2.1
1,605,820 - CCNA_01495 0.86 +1.2
1,605,838 - CCNA_01495 0.87 -0.7
1,605,902 + -0.3
1,605,918 - -0.1
1,605,920 + -0.3
1,605,920 + -1.8
1,605,928 - -1.7
1,605,949 + +0.1
1,605,949 + -0.5
1,605,949 + -0.1
1,605,949 + -0.6
1,605,957 - -1.8
1,605,957 - -1.7
1,605,957 - -1.8
1,606,002 + +0.2
1,606,028 + +1.7
1,606,028 + -1.0
1,606,034 + +0.8
1,606,036 - -0.5
1,606,064 + -0.4
1,606,096 + -0.4
1,606,936 + +0.3
1,606,944 - -0.3
1,606,969 + -1.5
1,606,969 + -1.0
1,607,228 + CCNA_01497 0.27 -0.7
1,607,228 + CCNA_01497 0.27 -1.1
1,607,424 + CCNA_01497 0.47 +0.9
1,607,424 + CCNA_01497 0.47 -1.7
1,607,424 + CCNA_01497 0.47 -1.7
1,607,542 + CCNA_01497 0.59 -1.7
1,607,701 + CCNA_01497 0.75 -1.3
1,607,842 + CCNA_01497 0.89 -1.2
1,607,845 + CCNA_01497 0.89 +0.0

Or see this region's nucleotide sequence