Experiment: R2A with Thallium(I) acetate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02865 and CA265_RS02870 are separated by 82 nucleotides CA265_RS02870 and CA265_RS02875 are separated by 109 nucleotides CA265_RS02875 and CA265_RS02880 are separated by 9 nucleotides CA265_RS02880 and CA265_RS02885 are separated by 375 nucleotides
CA265_RS02865: CA265_RS02865 - elongation factor Tu, at 714,719 to 715,906
_RS02865
CA265_RS02870: CA265_RS02870 - tRNA-Trp, at 715,989 to 716,059
_RS02870
CA265_RS02875: CA265_RS02875 - preprotein translocase subunit SecE, at 716,169 to 716,366
_RS02875
CA265_RS02880: CA265_RS02880 - transcription termination/antitermination factor NusG, at 716,376 to 716,915
_RS02880
CA265_RS02885: CA265_RS02885 - hypothetical protein, at 717,291 to 717,800
_RS02885
Position (kb) 716
717 Strain fitness (log2 ratio) -1
0
1
2 at 717.027 kb on - strand at 717.053 kb on - strand at 717.056 kb on + strand at 717.056 kb on + strand at 717.056 kb on + strand at 717.057 kb on - strand at 717.074 kb on - strand at 717.083 kb on + strand at 717.124 kb on + strand at 717.124 kb on + strand at 717.136 kb on - strand at 717.136 kb on - strand at 717.136 kb on - strand at 717.274 kb on - strand at 717.274 kb on - strand at 717.274 kb on - strand at 717.346 kb on + strand, within CA265_RS02885 at 717.346 kb on + strand, within CA265_RS02885 at 717.346 kb on + strand, within CA265_RS02885 at 717.349 kb on + strand, within CA265_RS02885 at 717.349 kb on + strand, within CA265_RS02885
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.0001 mg/ml remove 717,027 - -0.1 717,053 - +0.4 717,056 + +1.2 717,056 + -1.1 717,056 + -0.5 717,057 - -0.6 717,074 - -1.3 717,083 + -0.9 717,124 + +0.3 717,124 + +2.6 717,136 - +1.4 717,136 - -1.0 717,136 - -0.8 717,274 - +0.6 717,274 - -0.7 717,274 - +1.0 717,346 + CA265_RS02885 0.11 +0.8 717,346 + CA265_RS02885 0.11 -1.5 717,346 + CA265_RS02885 0.11 +0.3 717,349 + CA265_RS02885 0.11 -1.0 717,349 + CA265_RS02885 0.11 +0.2
Or see this region's nucleotide sequence