Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26975 and RR42_RS26980 are separated by 46 nucleotides RR42_RS26980 and RR42_RS26985 are separated by 156 nucleotides RR42_RS26985 and RR42_RS26990 overlap by 4 nucleotides
RR42_RS26975: RR42_RS26975 - MFS transporter, at 1,406,849 to 1,408,270
_RS26975
RR42_RS26980: RR42_RS26980 - hypothetical protein, at 1,408,317 to 1,408,730
_RS26980
RR42_RS26985: RR42_RS26985 - hypothetical protein, at 1,408,887 to 1,409,249
_RS26985
RR42_RS26990: RR42_RS26990 - membrane protein, at 1,409,246 to 1,410,892
_RS26990
Position (kb) 1408
1409
1410 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1408.001 kb on + strand, within RR42_RS26975 at 1408.002 kb on - strand, within RR42_RS26975 at 1408.061 kb on + strand, within RR42_RS26975 at 1408.061 kb on + strand, within RR42_RS26975 at 1408.061 kb on + strand, within RR42_RS26975 at 1408.062 kb on - strand, within RR42_RS26975 at 1408.062 kb on - strand, within RR42_RS26975 at 1408.062 kb on - strand, within RR42_RS26975 at 1408.062 kb on - strand, within RR42_RS26975 at 1408.268 kb on + strand at 1408.268 kb on + strand at 1408.268 kb on + strand at 1408.269 kb on - strand at 1408.471 kb on + strand, within RR42_RS26980 at 1408.471 kb on + strand, within RR42_RS26980 at 1408.471 kb on + strand, within RR42_RS26980 at 1408.471 kb on + strand, within RR42_RS26980 at 1408.471 kb on + strand, within RR42_RS26980 at 1408.471 kb on + strand, within RR42_RS26980 at 1408.472 kb on - strand, within RR42_RS26980 at 1408.472 kb on - strand, within RR42_RS26980 at 1408.472 kb on - strand, within RR42_RS26980 at 1408.472 kb on - strand, within RR42_RS26980 at 1408.493 kb on + strand, within RR42_RS26980 at 1408.493 kb on + strand, within RR42_RS26980 at 1408.699 kb on + strand at 1408.700 kb on - strand at 1408.911 kb on + strand at 1409.164 kb on + strand, within RR42_RS26985 at 1409.204 kb on + strand, within RR42_RS26985 at 1409.206 kb on + strand, within RR42_RS26985 at 1409.646 kb on + strand, within RR42_RS26990 at 1409.646 kb on + strand, within RR42_RS26990 at 1409.647 kb on - strand, within RR42_RS26990 at 1409.647 kb on - strand, within RR42_RS26990 at 1409.647 kb on - strand, within RR42_RS26990 at 1410.196 kb on - strand, within RR42_RS26990 at 1410.196 kb on - strand, within RR42_RS26990 at 1410.222 kb on + strand, within RR42_RS26990 at 1410.222 kb on + strand, within RR42_RS26990 at 1410.222 kb on + strand, within RR42_RS26990 at 1410.222 kb on + strand, within RR42_RS26990 at 1410.223 kb on - strand, within RR42_RS26990 at 1410.223 kb on - strand, within RR42_RS26990 at 1410.223 kb on - strand, within RR42_RS26990 at 1410.223 kb on - strand, within RR42_RS26990 at 1410.223 kb on - strand, within RR42_RS26990
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 1,408,001 + RR42_RS26975 0.81 -2.3 1,408,002 - RR42_RS26975 0.81 +0.6 1,408,061 + RR42_RS26975 0.85 -0.2 1,408,061 + RR42_RS26975 0.85 -1.1 1,408,061 + RR42_RS26975 0.85 -0.7 1,408,062 - RR42_RS26975 0.85 -0.9 1,408,062 - RR42_RS26975 0.85 +0.7 1,408,062 - RR42_RS26975 0.85 -0.7 1,408,062 - RR42_RS26975 0.85 -0.6 1,408,268 + -0.1 1,408,268 + +0.2 1,408,268 + -0.2 1,408,269 - -0.3 1,408,471 + RR42_RS26980 0.37 +1.1 1,408,471 + RR42_RS26980 0.37 +1.6 1,408,471 + RR42_RS26980 0.37 -0.3 1,408,471 + RR42_RS26980 0.37 +0.1 1,408,471 + RR42_RS26980 0.37 +1.9 1,408,471 + RR42_RS26980 0.37 -1.1 1,408,472 - RR42_RS26980 0.37 -0.6 1,408,472 - RR42_RS26980 0.37 -0.2 1,408,472 - RR42_RS26980 0.37 +0.4 1,408,472 - RR42_RS26980 0.37 +0.9 1,408,493 + RR42_RS26980 0.43 -0.5 1,408,493 + RR42_RS26980 0.43 +0.2 1,408,699 + +0.4 1,408,700 - +0.7 1,408,911 + -0.3 1,409,164 + RR42_RS26985 0.76 -1.2 1,409,204 + RR42_RS26985 0.87 -0.6 1,409,206 + RR42_RS26985 0.88 -0.7 1,409,646 + RR42_RS26990 0.24 -0.3 1,409,646 + RR42_RS26990 0.24 -0.5 1,409,647 - RR42_RS26990 0.24 +0.1 1,409,647 - RR42_RS26990 0.24 -0.4 1,409,647 - RR42_RS26990 0.24 -0.1 1,410,196 - RR42_RS26990 0.58 -0.7 1,410,196 - RR42_RS26990 0.58 -0.2 1,410,222 + RR42_RS26990 0.59 +0.1 1,410,222 + RR42_RS26990 0.59 -0.6 1,410,222 + RR42_RS26990 0.59 +0.5 1,410,222 + RR42_RS26990 0.59 +0.6 1,410,223 - RR42_RS26990 0.59 +0.1 1,410,223 - RR42_RS26990 0.59 -1.4 1,410,223 - RR42_RS26990 0.59 -0.7 1,410,223 - RR42_RS26990 0.59 -0.1 1,410,223 - RR42_RS26990 0.59 -0.6
Or see this region's nucleotide sequence