Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26885

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26880 and RR42_RS26885 are separated by 51 nucleotidesRR42_RS26885 and RR42_RS26890 are separated by 135 nucleotides RR42_RS26880: RR42_RS26880 - ABC transporter substrate-binding protein, at 1,384,419 to 1,385,426 _RS26880 RR42_RS26885: RR42_RS26885 - peptidase M20, at 1,385,478 to 1,386,632 _RS26885 RR42_RS26890: RR42_RS26890 - RpiR family transcriptional regulator, at 1,386,768 to 1,387,673 _RS26890 Position (kb) 1385 1386 1387Strain fitness (log2 ratio) -1 0 1at 1384.588 kb on + strand, within RR42_RS26880at 1384.588 kb on + strand, within RR42_RS26880at 1384.740 kb on + strand, within RR42_RS26880at 1384.740 kb on + strand, within RR42_RS26880at 1384.759 kb on + strand, within RR42_RS26880at 1384.861 kb on + strand, within RR42_RS26880at 1384.862 kb on - strand, within RR42_RS26880at 1384.862 kb on - strand, within RR42_RS26880at 1384.961 kb on - strand, within RR42_RS26880at 1385.068 kb on + strand, within RR42_RS26880at 1385.069 kb on - strand, within RR42_RS26880at 1385.132 kb on + strand, within RR42_RS26880at 1385.133 kb on - strand, within RR42_RS26880at 1385.133 kb on - strand, within RR42_RS26880at 1385.133 kb on - strand, within RR42_RS26880at 1385.135 kb on - strand, within RR42_RS26880at 1385.443 kb on + strandat 1385.692 kb on + strand, within RR42_RS26885at 1385.765 kb on + strand, within RR42_RS26885at 1385.765 kb on + strand, within RR42_RS26885at 1385.879 kb on + strand, within RR42_RS26885at 1386.295 kb on + strand, within RR42_RS26885at 1386.363 kb on - strand, within RR42_RS26885at 1386.659 kb on + strandat 1386.660 kb on - strandat 1386.660 kb on - strandat 1386.677 kb on + strandat 1386.677 kb on + strandat 1386.678 kb on - strandat 1386.679 kb on + strandat 1386.679 kb on + strandat 1386.804 kb on - strandat 1386.885 kb on + strand, within RR42_RS26890at 1386.978 kb on + strand, within RR42_RS26890at 1386.979 kb on - strand, within RR42_RS26890at 1386.987 kb on + strand, within RR42_RS26890at 1386.988 kb on - strand, within RR42_RS26890at 1387.268 kb on + strand, within RR42_RS26890at 1387.269 kb on - strand, within RR42_RS26890at 1387.269 kb on - strand, within RR42_RS26890at 1387.466 kb on - strand, within RR42_RS26890at 1387.527 kb on + strand, within RR42_RS26890at 1387.527 kb on + strand, within RR42_RS26890at 1387.528 kb on - strand, within RR42_RS26890at 1387.529 kb on + strand, within RR42_RS26890at 1387.529 kb on + strand, within RR42_RS26890

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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1,384,588 + RR42_RS26880 0.17 -0.9
1,384,588 + RR42_RS26880 0.17 -0.5
1,384,740 + RR42_RS26880 0.32 +1.2
1,384,740 + RR42_RS26880 0.32 -0.1
1,384,759 + RR42_RS26880 0.34 -0.7
1,384,861 + RR42_RS26880 0.44 -0.7
1,384,862 - RR42_RS26880 0.44 +0.0
1,384,862 - RR42_RS26880 0.44 +0.3
1,384,961 - RR42_RS26880 0.54 -0.1
1,385,068 + RR42_RS26880 0.64 +0.9
1,385,069 - RR42_RS26880 0.64 -0.6
1,385,132 + RR42_RS26880 0.71 -0.7
1,385,133 - RR42_RS26880 0.71 -0.4
1,385,133 - RR42_RS26880 0.71 -0.5
1,385,133 - RR42_RS26880 0.71 +0.2
1,385,135 - RR42_RS26880 0.71 -0.2
1,385,443 + +0.4
1,385,692 + RR42_RS26885 0.19 +0.1
1,385,765 + RR42_RS26885 0.25 +0.5
1,385,765 + RR42_RS26885 0.25 +0.3
1,385,879 + RR42_RS26885 0.35 +1.1
1,386,295 + RR42_RS26885 0.71 +0.1
1,386,363 - RR42_RS26885 0.77 -0.3
1,386,659 + -0.4
1,386,660 - +0.1
1,386,660 - +0.1
1,386,677 + +1.3
1,386,677 + +0.0
1,386,678 - +0.7
1,386,679 + -1.4
1,386,679 + -1.4
1,386,804 - +0.1
1,386,885 + RR42_RS26890 0.13 -0.0
1,386,978 + RR42_RS26890 0.23 +0.4
1,386,979 - RR42_RS26890 0.23 +0.3
1,386,987 + RR42_RS26890 0.24 -0.9
1,386,988 - RR42_RS26890 0.24 -0.0
1,387,268 + RR42_RS26890 0.55 -1.2
1,387,269 - RR42_RS26890 0.55 +1.1
1,387,269 - RR42_RS26890 0.55 -1.4
1,387,466 - RR42_RS26890 0.77 +1.2
1,387,527 + RR42_RS26890 0.84 -0.4
1,387,527 + RR42_RS26890 0.84 +0.5
1,387,528 - RR42_RS26890 0.84 +1.5
1,387,529 + RR42_RS26890 0.84 -0.4
1,387,529 + RR42_RS26890 0.84 +0.5

Or see this region's nucleotide sequence