Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25030

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS25020 and RR42_RS25025 are separated by 21 nucleotidesRR42_RS25025 and RR42_RS25030 are separated by 53 nucleotidesRR42_RS25030 and RR42_RS25035 overlap by 4 nucleotidesRR42_RS25035 and RR42_RS25040 are separated by 6 nucleotides RR42_RS25020: RR42_RS25020 - amino acid ABC transporter ATPase, at 951,371 to 952,129 _RS25020 RR42_RS25025: RR42_RS25025 - sugar ABC transporter ATPase, at 952,151 to 952,921 _RS25025 RR42_RS25030: RR42_RS25030 - ABC transporter permease, at 952,975 to 953,820 _RS25030 RR42_RS25035: RR42_RS25035 - ABC transporter permease, at 953,817 to 954,710 _RS25035 RR42_RS25040: RR42_RS25040 - amino acid ABC transporter substrate-binding protein, at 954,717 to 955,853 _RS25040 Position (kb) 952 953 954Strain fitness (log2 ratio) -1 0 1at 952.164 kb on + strandat 952.165 kb on - strandat 952.242 kb on + strand, within RR42_RS25025at 952.243 kb on - strand, within RR42_RS25025at 952.243 kb on - strand, within RR42_RS25025at 952.243 kb on - strand, within RR42_RS25025at 952.248 kb on + strand, within RR42_RS25025at 952.249 kb on - strand, within RR42_RS25025at 952.430 kb on - strand, within RR42_RS25025at 953.036 kb on + strandat 953.307 kb on - strand, within RR42_RS25030at 953.682 kb on - strand, within RR42_RS25030at 953.769 kb on - strandat 953.769 kb on - strandat 953.810 kb on + strandat 953.811 kb on - strandat 953.811 kb on - strandat 953.820 kb on + strandat 953.933 kb on + strand, within RR42_RS25035at 953.934 kb on - strand, within RR42_RS25035at 953.934 kb on - strand, within RR42_RS25035at 953.935 kb on + strand, within RR42_RS25035at 953.935 kb on + strand, within RR42_RS25035at 953.935 kb on + strand, within RR42_RS25035at 953.935 kb on + strand, within RR42_RS25035at 953.936 kb on - strand, within RR42_RS25035at 953.936 kb on - strand, within RR42_RS25035at 953.936 kb on - strand, within RR42_RS25035at 953.941 kb on + strand, within RR42_RS25035at 954.179 kb on + strand, within RR42_RS25035at 954.319 kb on + strand, within RR42_RS25035at 954.319 kb on + strand, within RR42_RS25035at 954.320 kb on - strand, within RR42_RS25035at 954.428 kb on - strand, within RR42_RS25035at 954.474 kb on + strand, within RR42_RS25035at 954.495 kb on + strand, within RR42_RS25035at 954.772 kb on + strandat 954.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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952,164 + -0.2
952,165 - -0.4
952,242 + RR42_RS25025 0.12 +0.6
952,243 - RR42_RS25025 0.12 +0.3
952,243 - RR42_RS25025 0.12 -0.7
952,243 - RR42_RS25025 0.12 -0.1
952,248 + RR42_RS25025 0.13 -0.5
952,249 - RR42_RS25025 0.13 +0.2
952,430 - RR42_RS25025 0.36 +0.1
953,036 + -0.8
953,307 - RR42_RS25030 0.39 +1.0
953,682 - RR42_RS25030 0.84 +0.3
953,769 - -1.5
953,769 - +0.6
953,810 + +1.1
953,811 - +1.4
953,811 - -0.0
953,820 + +0.3
953,933 + RR42_RS25035 0.13 -0.5
953,934 - RR42_RS25035 0.13 -0.1
953,934 - RR42_RS25035 0.13 +0.1
953,935 + RR42_RS25035 0.13 +0.5
953,935 + RR42_RS25035 0.13 +0.2
953,935 + RR42_RS25035 0.13 -1.5
953,935 + RR42_RS25035 0.13 +0.1
953,936 - RR42_RS25035 0.13 -0.2
953,936 - RR42_RS25035 0.13 +0.3
953,936 - RR42_RS25035 0.13 +0.3
953,941 + RR42_RS25035 0.14 +0.3
954,179 + RR42_RS25035 0.40 +0.4
954,319 + RR42_RS25035 0.56 +0.7
954,319 + RR42_RS25035 0.56 +0.2
954,320 - RR42_RS25035 0.56 -0.3
954,428 - RR42_RS25035 0.68 -0.8
954,474 + RR42_RS25035 0.73 +1.0
954,495 + RR42_RS25035 0.76 -0.1
954,772 + -1.6
954,804 - -0.3

Or see this region's nucleotide sequence