Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24190 and RR42_RS24195 are separated by 806 nucleotides
RR42_RS24190: RR42_RS24190 - LysR family transcriptional regulator, at 752,641 to 752,946
_RS24190
RR42_RS24195: RR42_RS24195 - short-chain dehydrogenase, at 753,753 to 754,589
_RS24195
Position (kb) 752
753 Strain fitness (log2 ratio) -2
-1
0
1
2 at 751.669 kb on + strand at 751.669 kb on + strand at 751.692 kb on + strand at 751.692 kb on + strand at 751.734 kb on - strand at 751.770 kb on + strand at 751.770 kb on + strand at 751.770 kb on + strand at 751.770 kb on + strand at 751.771 kb on - strand at 751.771 kb on - strand at 751.953 kb on + strand at 751.953 kb on + strand at 751.954 kb on - strand at 751.988 kb on - strand at 751.988 kb on - strand at 752.019 kb on + strand at 752.019 kb on + strand at 752.020 kb on - strand at 752.020 kb on - strand at 752.150 kb on - strand at 752.179 kb on - strand at 752.216 kb on + strand at 752.217 kb on - strand at 752.228 kb on + strand at 752.282 kb on + strand at 752.282 kb on + strand at 752.311 kb on + strand at 752.311 kb on + strand at 752.312 kb on - strand at 752.359 kb on - strand at 752.452 kb on + strand at 752.477 kb on + strand at 752.478 kb on - strand at 752.478 kb on - strand at 752.520 kb on + strand at 752.520 kb on + strand at 752.549 kb on + strand at 752.556 kb on + strand at 752.556 kb on + strand at 752.556 kb on + strand at 752.556 kb on + strand at 752.557 kb on - strand at 752.557 kb on - strand at 752.581 kb on + strand at 752.606 kb on + strand at 752.607 kb on - strand at 752.728 kb on - strand, within RR42_RS24190 at 752.745 kb on + strand, within RR42_RS24190 at 752.745 kb on + strand, within RR42_RS24190 at 752.820 kb on - strand, within RR42_RS24190 at 752.820 kb on - strand, within RR42_RS24190 at 753.219 kb on + strand at 753.267 kb on + strand at 753.450 kb on - strand at 753.467 kb on + strand at 753.468 kb on - strand at 753.468 kb on - strand at 753.468 kb on - strand at 753.534 kb on + strand at 753.559 kb on - strand at 753.597 kb on + strand at 753.598 kb on - strand at 753.598 kb on - strand at 753.599 kb on + strand at 753.599 kb on + strand at 753.600 kb on - strand at 753.600 kb on - strand at 753.600 kb on - strand at 753.600 kb on - strand at 753.640 kb on + strand at 753.641 kb on - strand at 753.701 kb on - strand at 753.701 kb on - strand at 753.855 kb on + strand, within RR42_RS24195 at 753.855 kb on + strand, within RR42_RS24195 at 753.855 kb on + strand, within RR42_RS24195 at 753.855 kb on + strand, within RR42_RS24195 at 753.855 kb on + strand, within RR42_RS24195 at 753.856 kb on - strand, within RR42_RS24195 at 753.889 kb on - strand, within RR42_RS24195
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 751,669 + +0.2 751,669 + -0.0 751,692 + +0.4 751,692 + +1.4 751,734 - +0.5 751,770 + -0.7 751,770 + +1.3 751,770 + -0.1 751,770 + +0.0 751,771 - +0.5 751,771 - +0.9 751,953 + +1.1 751,953 + +1.2 751,954 - -0.0 751,988 - +0.4 751,988 - -0.5 752,019 + +0.6 752,019 + -0.1 752,020 - +0.8 752,020 - +0.8 752,150 - -0.4 752,179 - +0.4 752,216 + +0.4 752,217 - +0.1 752,228 + -1.2 752,282 + -0.0 752,282 + +0.2 752,311 + -0.4 752,311 + -0.4 752,312 - +0.2 752,359 - +0.9 752,452 + -0.4 752,477 + +1.5 752,478 - +0.7 752,478 - -0.3 752,520 + +0.0 752,520 + +0.2 752,549 + +0.3 752,556 + -0.3 752,556 + -1.8 752,556 + +0.2 752,556 + -0.1 752,557 - +0.3 752,557 - +0.7 752,581 + -0.9 752,606 + -0.4 752,607 - +0.4 752,728 - RR42_RS24190 0.28 +0.8 752,745 + RR42_RS24190 0.34 +0.4 752,745 + RR42_RS24190 0.34 +0.3 752,820 - RR42_RS24190 0.58 +1.0 752,820 - RR42_RS24190 0.58 +0.1 753,219 + +0.7 753,267 + +0.1 753,450 - -0.6 753,467 + +0.5 753,468 - -0.1 753,468 - +0.4 753,468 - -0.7 753,534 + -0.8 753,559 - +0.4 753,597 + +0.4 753,598 - -0.5 753,598 - -1.2 753,599 + +1.3 753,599 + +1.1 753,600 - -0.6 753,600 - +2.0 753,600 - -1.7 753,600 - -0.4 753,640 + -0.2 753,641 - +0.4 753,701 - -0.4 753,701 - +0.4 753,855 + RR42_RS24195 0.12 -0.6 753,855 + RR42_RS24195 0.12 +0.7 753,855 + RR42_RS24195 0.12 +0.5 753,855 + RR42_RS24195 0.12 +0.2 753,855 + RR42_RS24195 0.12 +1.2 753,856 - RR42_RS24195 0.12 +0.6 753,889 - RR42_RS24195 0.16 -1.6
Or see this region's nucleotide sequence