Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23780

Experiment: L-Asparagine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS23775 and RR42_RS23780 overlap by 4 nucleotidesRR42_RS23780 and RR42_RS23785 are separated by 305 nucleotidesRR42_RS23785 and RR42_RS23790 are separated by 385 nucleotides RR42_RS23775: RR42_RS23775 - hypothetical protein, at 657,568 to 658,818 _RS23775 RR42_RS23780: RR42_RS23780 - hypothetical protein, at 658,815 to 659,753 _RS23780 RR42_RS23785: RR42_RS23785 - hypothetical protein, at 660,059 to 660,319 _RS23785 RR42_RS23790: RR42_RS23790 - hypothetical protein, at 660,705 to 662,045 _RS23790 Position (kb) 658 659 660Strain fitness (log2 ratio) -2 -1 0 1 2 3at 657.817 kb on + strand, within RR42_RS23775at 657.817 kb on + strand, within RR42_RS23775at 657.817 kb on + strand, within RR42_RS23775at 657.817 kb on + strand, within RR42_RS23775at 657.817 kb on + strand, within RR42_RS23775at 657.817 kb on + strand, within RR42_RS23775at 657.818 kb on - strand, within RR42_RS23775at 657.827 kb on - strand, within RR42_RS23775at 657.827 kb on - strand, within RR42_RS23775at 657.833 kb on + strand, within RR42_RS23775at 657.833 kb on + strand, within RR42_RS23775at 657.834 kb on - strand, within RR42_RS23775at 657.838 kb on - strand, within RR42_RS23775at 657.865 kb on + strand, within RR42_RS23775at 657.866 kb on - strand, within RR42_RS23775at 657.866 kb on - strand, within RR42_RS23775at 657.871 kb on + strand, within RR42_RS23775at 657.871 kb on + strand, within RR42_RS23775at 657.871 kb on + strand, within RR42_RS23775at 657.872 kb on - strand, within RR42_RS23775at 657.872 kb on - strand, within RR42_RS23775at 657.872 kb on - strand, within RR42_RS23775at 657.872 kb on - strand, within RR42_RS23775at 657.872 kb on - strand, within RR42_RS23775at 657.900 kb on - strand, within RR42_RS23775at 657.929 kb on - strand, within RR42_RS23775at 657.929 kb on - strand, within RR42_RS23775at 657.929 kb on - strand, within RR42_RS23775at 657.929 kb on - strand, within RR42_RS23775at 657.929 kb on - strand, within RR42_RS23775at 658.073 kb on + strand, within RR42_RS23775at 658.186 kb on - strand, within RR42_RS23775at 658.245 kb on + strand, within RR42_RS23775at 658.313 kb on + strand, within RR42_RS23775at 658.313 kb on + strand, within RR42_RS23775at 658.313 kb on + strand, within RR42_RS23775at 658.313 kb on + strand, within RR42_RS23775at 658.314 kb on - strand, within RR42_RS23775at 658.314 kb on - strand, within RR42_RS23775at 658.314 kb on - strand, within RR42_RS23775at 658.317 kb on + strand, within RR42_RS23775at 658.317 kb on + strand, within RR42_RS23775at 658.317 kb on + strand, within RR42_RS23775at 658.317 kb on + strand, within RR42_RS23775at 658.317 kb on + strand, within RR42_RS23775at 658.317 kb on + strand, within RR42_RS23775at 658.317 kb on + strand, within RR42_RS23775at 658.317 kb on + strand, within RR42_RS23775at 658.317 kb on + strand, within RR42_RS23775at 658.318 kb on - strand, within RR42_RS23775at 658.318 kb on - strand, within RR42_RS23775at 658.318 kb on - strand, within RR42_RS23775at 658.318 kb on - strand, within RR42_RS23775at 658.318 kb on - strand, within RR42_RS23775at 658.331 kb on + strand, within RR42_RS23775at 658.425 kb on + strand, within RR42_RS23775at 658.537 kb on - strand, within RR42_RS23775at 658.613 kb on + strand, within RR42_RS23775at 658.614 kb on - strand, within RR42_RS23775at 658.717 kb on + strandat 658.718 kb on - strandat 658.756 kb on + strandat 658.757 kb on + strandat 658.758 kb on - strandat 658.758 kb on - strandat 658.758 kb on - strandat 658.768 kb on + strandat 658.768 kb on + strandat 658.814 kb on + strandat 658.849 kb on + strandat 658.849 kb on + strandat 658.850 kb on - strandat 658.850 kb on - strandat 658.850 kb on - strandat 658.850 kb on - strandat 658.909 kb on + strand, within RR42_RS23780at 658.960 kb on + strand, within RR42_RS23780at 659.117 kb on - strand, within RR42_RS23780at 659.124 kb on + strand, within RR42_RS23780at 659.125 kb on - strand, within RR42_RS23780at 659.129 kb on + strand, within RR42_RS23780at 659.129 kb on + strand, within RR42_RS23780at 659.129 kb on + strand, within RR42_RS23780at 659.130 kb on - strand, within RR42_RS23780at 659.263 kb on + strand, within RR42_RS23780at 659.304 kb on + strand, within RR42_RS23780at 659.304 kb on + strand, within RR42_RS23780at 659.305 kb on - strand, within RR42_RS23780at 659.306 kb on + strand, within RR42_RS23780at 659.307 kb on - strand, within RR42_RS23780at 659.558 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.819 kb on + strandat 659.819 kb on + strandat 659.819 kb on + strandat 659.903 kb on - strandat 659.903 kb on - strandat 659.903 kb on - strandat 659.934 kb on + strandat 660.068 kb on - strandat 660.075 kb on - strandat 660.095 kb on + strand, within RR42_RS23785at 660.190 kb on + strand, within RR42_RS23785at 660.190 kb on + strand, within RR42_RS23785at 660.191 kb on - strand, within RR42_RS23785at 660.191 kb on - strand, within RR42_RS23785at 660.191 kb on - strand, within RR42_RS23785at 660.193 kb on - strand, within RR42_RS23785at 660.215 kb on + strand, within RR42_RS23785at 660.215 kb on + strand, within RR42_RS23785at 660.216 kb on - strand, within RR42_RS23785at 660.216 kb on - strand, within RR42_RS23785at 660.317 kb on + strandat 660.320 kb on + strandat 660.321 kb on - strandat 660.329 kb on - strandat 660.330 kb on + strandat 660.330 kb on + strandat 660.331 kb on - strandat 660.331 kb on - strandat 660.380 kb on + strandat 660.381 kb on - strandat 660.381 kb on - strandat 660.426 kb on + strandat 660.426 kb on + strandat 660.533 kb on + strandat 660.534 kb on - strandat 660.534 kb on - strandat 660.536 kb on + strandat 660.536 kb on + strandat 660.536 kb on + strandat 660.537 kb on - strandat 660.547 kb on - strandat 660.589 kb on - strandat 660.589 kb on - strandat 660.678 kb on + strandat 660.678 kb on + strandat 660.678 kb on + strandat 660.678 kb on + strandat 660.679 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
remove
657,817 + RR42_RS23775 0.20 -0.1
657,817 + RR42_RS23775 0.20 -0.1
657,817 + RR42_RS23775 0.20 -0.4
657,817 + RR42_RS23775 0.20 -0.0
657,817 + RR42_RS23775 0.20 -0.6
657,817 + RR42_RS23775 0.20 +0.4
657,818 - RR42_RS23775 0.20 -0.5
657,827 - RR42_RS23775 0.21 +0.1
657,827 - RR42_RS23775 0.21 +1.7
657,833 + RR42_RS23775 0.21 +0.6
657,833 + RR42_RS23775 0.21 -0.1
657,834 - RR42_RS23775 0.21 +0.4
657,838 - RR42_RS23775 0.22 +0.1
657,865 + RR42_RS23775 0.24 -0.8
657,866 - RR42_RS23775 0.24 -1.0
657,866 - RR42_RS23775 0.24 -2.6
657,871 + RR42_RS23775 0.24 -1.4
657,871 + RR42_RS23775 0.24 +1.0
657,871 + RR42_RS23775 0.24 +0.3
657,872 - RR42_RS23775 0.24 -0.3
657,872 - RR42_RS23775 0.24 -0.0
657,872 - RR42_RS23775 0.24 -0.9
657,872 - RR42_RS23775 0.24 -1.1
657,872 - RR42_RS23775 0.24 -0.3
657,900 - RR42_RS23775 0.27 +0.1
657,929 - RR42_RS23775 0.29 +0.2
657,929 - RR42_RS23775 0.29 -0.1
657,929 - RR42_RS23775 0.29 -0.1
657,929 - RR42_RS23775 0.29 +0.5
657,929 - RR42_RS23775 0.29 -0.8
658,073 + RR42_RS23775 0.40 +0.1
658,186 - RR42_RS23775 0.49 +0.2
658,245 + RR42_RS23775 0.54 -0.1
658,313 + RR42_RS23775 0.60 +0.3
658,313 + RR42_RS23775 0.60 +0.1
658,313 + RR42_RS23775 0.60 -0.7
658,313 + RR42_RS23775 0.60 -0.6
658,314 - RR42_RS23775 0.60 -0.6
658,314 - RR42_RS23775 0.60 +1.9
658,314 - RR42_RS23775 0.60 +1.1
658,317 + RR42_RS23775 0.60 -0.6
658,317 + RR42_RS23775 0.60 -0.7
658,317 + RR42_RS23775 0.60 -0.4
658,317 + RR42_RS23775 0.60 -0.5
658,317 + RR42_RS23775 0.60 -1.8
658,317 + RR42_RS23775 0.60 -0.8
658,317 + RR42_RS23775 0.60 -0.7
658,317 + RR42_RS23775 0.60 +0.2
658,317 + RR42_RS23775 0.60 -0.8
658,318 - RR42_RS23775 0.60 -0.0
658,318 - RR42_RS23775 0.60 -0.6
658,318 - RR42_RS23775 0.60 -1.2
658,318 - RR42_RS23775 0.60 +0.2
658,318 - RR42_RS23775 0.60 -0.7
658,331 + RR42_RS23775 0.61 -0.4
658,425 + RR42_RS23775 0.69 -0.1
658,537 - RR42_RS23775 0.77 -0.7
658,613 + RR42_RS23775 0.84 +0.3
658,614 - RR42_RS23775 0.84 -0.6
658,717 + -0.9
658,718 - +0.6
658,756 + -0.6
658,757 + -2.7
658,758 - +0.0
658,758 - +0.0
658,758 - +0.2
658,768 + -0.7
658,768 + -1.1
658,814 + +0.9
658,849 + -0.4
658,849 + -0.3
658,850 - -0.0
658,850 - +0.6
658,850 - +3.1
658,850 - -0.1
658,909 + RR42_RS23780 0.10 +0.4
658,960 + RR42_RS23780 0.15 +0.0
659,117 - RR42_RS23780 0.32 +0.0
659,124 + RR42_RS23780 0.33 -0.3
659,125 - RR42_RS23780 0.33 +0.6
659,129 + RR42_RS23780 0.33 -0.4
659,129 + RR42_RS23780 0.33 +0.8
659,129 + RR42_RS23780 0.33 -0.3
659,130 - RR42_RS23780 0.34 +0.0
659,263 + RR42_RS23780 0.48 -0.3
659,304 + RR42_RS23780 0.52 +1.1
659,304 + RR42_RS23780 0.52 +0.8
659,305 - RR42_RS23780 0.52 -0.3
659,306 + RR42_RS23780 0.52 -1.0
659,307 - RR42_RS23780 0.52 -0.5
659,558 - RR42_RS23780 0.79 +0.2
659,656 - RR42_RS23780 0.90 -0.6
659,656 - RR42_RS23780 0.90 +1.2
659,656 - RR42_RS23780 0.90 +0.1
659,656 - RR42_RS23780 0.90 +0.3
659,656 - RR42_RS23780 0.90 -0.7
659,656 - RR42_RS23780 0.90 +0.2
659,656 - RR42_RS23780 0.90 +0.4
659,819 + +0.6
659,819 + -0.5
659,819 + -0.2
659,903 - -0.7
659,903 - +0.9
659,903 - +1.0
659,934 + +2.1
660,068 - +0.1
660,075 - -0.3
660,095 + RR42_RS23785 0.14 +0.8
660,190 + RR42_RS23785 0.50 -0.3
660,190 + RR42_RS23785 0.50 +0.1
660,191 - RR42_RS23785 0.51 -0.1
660,191 - RR42_RS23785 0.51 +0.1
660,191 - RR42_RS23785 0.51 -0.9
660,193 - RR42_RS23785 0.51 +0.4
660,215 + RR42_RS23785 0.60 +0.0
660,215 + RR42_RS23785 0.60 -0.2
660,216 - RR42_RS23785 0.60 +0.4
660,216 - RR42_RS23785 0.60 -0.5
660,317 + -1.5
660,320 + +0.3
660,321 - +2.4
660,329 - +0.6
660,330 + +0.9
660,330 + -0.4
660,331 - -0.0
660,331 - +0.4
660,380 + +0.4
660,381 - +0.0
660,381 - -0.1
660,426 + -0.2
660,426 + +0.4
660,533 + +0.9
660,534 - +0.5
660,534 - -0.2
660,536 + +0.1
660,536 + +0.3
660,536 + -0.6
660,537 - -1.4
660,547 - -0.6
660,589 - -0.3
660,589 - +0.7
660,678 + +0.3
660,678 + +1.4
660,678 + +0.0
660,678 + -0.2
660,679 - -0.1

Or see this region's nucleotide sequence