Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21455

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21450 and RR42_RS21455 are separated by 12 nucleotidesRR42_RS21455 and RR42_RS21460 are separated by 36 nucleotides RR42_RS21450: RR42_RS21450 - hypothetical protein, at 143,233 to 143,598 _RS21450 RR42_RS21455: RR42_RS21455 - transposase, at 143,611 to 144,705 _RS21455 RR42_RS21460: RR42_RS21460 - hypothetical protein, at 144,742 to 144,957 _RS21460 Position (kb) 143 144 145Strain fitness (log2 ratio) -2 -1 0 1at 142.667 kb on + strandat 142.668 kb on - strandat 142.668 kb on - strandat 142.696 kb on + strandat 142.697 kb on - strandat 142.844 kb on - strandat 142.844 kb on - strandat 142.855 kb on + strandat 142.891 kb on + strandat 142.891 kb on + strandat 142.891 kb on + strandat 142.892 kb on - strandat 142.894 kb on - strandat 142.894 kb on - strandat 142.960 kb on + strandat 143.016 kb on + strandat 143.060 kb on + strandat 143.060 kb on + strandat 143.061 kb on - strandat 143.156 kb on + strandat 143.261 kb on + strandat 143.261 kb on + strandat 143.275 kb on - strand, within RR42_RS21450at 143.309 kb on + strand, within RR42_RS21450at 143.570 kb on + strandat 143.571 kb on - strandat 143.722 kb on + strand, within RR42_RS21455at 143.741 kb on - strand, within RR42_RS21455at 143.975 kb on - strand, within RR42_RS21455at 144.191 kb on - strand, within RR42_RS21455at 144.636 kb on + strandat 144.636 kb on + strandat 144.766 kb on + strand, within RR42_RS21460at 144.767 kb on - strand, within RR42_RS21460at 144.827 kb on + strand, within RR42_RS21460at 144.828 kb on - strand, within RR42_RS21460at 144.880 kb on + strand, within RR42_RS21460at 144.880 kb on + strand, within RR42_RS21460at 145.012 kb on - strandat 145.100 kb on + strandat 145.100 kb on + strandat 145.100 kb on + strandat 145.100 kb on + strandat 145.103 kb on - strandat 145.192 kb on + strandat 145.192 kb on + strandat 145.192 kb on + strandat 145.204 kb on + strandat 145.204 kb on + strandat 145.205 kb on - strandat 145.243 kb on - strandat 145.326 kb on - strandat 145.561 kb on + strandat 145.593 kb on + strandat 145.595 kb on + strandat 145.640 kb on - strandat 145.668 kb on + strandat 145.686 kb on + strandat 145.687 kb on - strandat 145.700 kb on + strandat 145.700 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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142,667 + -1.1
142,668 - -0.3
142,668 - +0.3
142,696 + -0.2
142,697 - -0.8
142,844 - -0.7
142,844 - +0.9
142,855 + +1.5
142,891 + -0.1
142,891 + -0.8
142,891 + +0.5
142,892 - +1.3
142,894 - +0.4
142,894 - +0.5
142,960 + -1.1
143,016 + +0.1
143,060 + +0.3
143,060 + -0.6
143,061 - -1.3
143,156 + -0.0
143,261 + +0.5
143,261 + -0.6
143,275 - RR42_RS21450 0.11 +0.1
143,309 + RR42_RS21450 0.21 +0.5
143,570 + -0.4
143,571 - -0.5
143,722 + RR42_RS21455 0.10 -0.9
143,741 - RR42_RS21455 0.12 +0.6
143,975 - RR42_RS21455 0.33 +0.9
144,191 - RR42_RS21455 0.53 +0.9
144,636 + +0.5
144,636 + -2.3
144,766 + RR42_RS21460 0.11 -0.1
144,767 - RR42_RS21460 0.12 +0.2
144,827 + RR42_RS21460 0.39 +1.2
144,828 - RR42_RS21460 0.40 -0.0
144,880 + RR42_RS21460 0.64 +0.7
144,880 + RR42_RS21460 0.64 +0.4
145,012 - -0.7
145,100 + +0.1
145,100 + +0.6
145,100 + -0.8
145,100 + -0.7
145,103 - -0.2
145,192 + -0.4
145,192 + -0.1
145,192 + +0.8
145,204 + -0.2
145,204 + -0.7
145,205 - +0.9
145,243 - +0.5
145,326 - -1.0
145,561 + -0.1
145,593 + -0.2
145,595 + -0.1
145,640 - +0.1
145,668 + -0.6
145,686 + +0.6
145,687 - +0.5
145,700 + +0.2
145,700 + -0.1

Or see this region's nucleotide sequence