Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18710 and RR42_RS18715 are separated by 16 nucleotides RR42_RS18715 and RR42_RS18720 overlap by 1 nucleotides RR42_RS18720 and RR42_RS18725 are separated by 113 nucleotides RR42_RS18725 and RR42_RS18730 are separated by 15 nucleotides RR42_RS18730 and RR42_RS18735 are separated by 44 nucleotides
RR42_RS18710: RR42_RS18710 - endonuclease, at 4,054,434 to 4,055,381
_RS18710
RR42_RS18715: RR42_RS18715 - phage capsid protein, at 4,055,398 to 4,056,312
_RS18715
RR42_RS18720: RR42_RS18720 - hypothetical protein, at 4,056,312 to 4,057,247
_RS18720
RR42_RS18725: RR42_RS18725 - hypothetical protein, at 4,057,361 to 4,057,672
_RS18725
RR42_RS18730: RR42_RS18730 - hypothetical protein, at 4,057,688 to 4,057,990
_RS18730
RR42_RS18735: RR42_RS18735 - DNA-binding protein, at 4,058,035 to 4,058,403
_RS18735
Position (kb)
4056
4057
4058 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4055.334 kb on + strand at 4055.334 kb on + strand at 4055.373 kb on + strand at 4055.374 kb on - strand at 4055.403 kb on - strand at 4055.612 kb on + strand, within RR42_RS18715 at 4055.612 kb on + strand, within RR42_RS18715 at 4055.613 kb on - strand, within RR42_RS18715 at 4055.647 kb on + strand, within RR42_RS18715 at 4055.649 kb on - strand, within RR42_RS18715 at 4055.899 kb on + strand, within RR42_RS18715 at 4055.900 kb on - strand, within RR42_RS18715 at 4055.981 kb on - strand, within RR42_RS18715 at 4055.995 kb on + strand, within RR42_RS18715 at 4055.998 kb on + strand, within RR42_RS18715 at 4055.999 kb on - strand, within RR42_RS18715 at 4055.999 kb on - strand, within RR42_RS18715 at 4056.279 kb on + strand at 4056.279 kb on + strand at 4056.280 kb on - strand at 4056.280 kb on - strand at 4056.443 kb on - strand, within RR42_RS18720 at 4056.443 kb on - strand, within RR42_RS18720 at 4056.448 kb on + strand, within RR42_RS18720 at 4056.449 kb on - strand, within RR42_RS18720 at 4056.449 kb on - strand, within RR42_RS18720 at 4056.449 kb on - strand, within RR42_RS18720 at 4056.449 kb on - strand, within RR42_RS18720 at 4056.449 kb on - strand, within RR42_RS18720 at 4056.478 kb on + strand, within RR42_RS18720 at 4056.536 kb on + strand, within RR42_RS18720 at 4057.163 kb on - strand at 4057.253 kb on + strand at 4057.254 kb on - strand at 4057.254 kb on - strand at 4057.254 kb on - strand at 4057.306 kb on + strand at 4057.306 kb on + strand at 4057.306 kb on + strand at 4057.307 kb on - strand at 4057.307 kb on - strand at 4057.586 kb on + strand, within RR42_RS18725 at 4057.586 kb on + strand, within RR42_RS18725 at 4057.587 kb on - strand, within RR42_RS18725 at 4057.910 kb on + strand, within RR42_RS18730 at 4057.911 kb on - strand, within RR42_RS18730 at 4057.911 kb on - strand, within RR42_RS18730 at 4058.001 kb on + strand at 4058.001 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 4,055,334 + -1.5 4,055,334 + -0.8 4,055,373 + +0.6 4,055,374 - +0.3 4,055,403 - +0.3 4,055,612 + RR42_RS18715 0.23 -0.0 4,055,612 + RR42_RS18715 0.23 -0.1 4,055,613 - RR42_RS18715 0.23 +1.1 4,055,647 + RR42_RS18715 0.27 +0.3 4,055,649 - RR42_RS18715 0.27 -0.3 4,055,899 + RR42_RS18715 0.55 +0.1 4,055,900 - RR42_RS18715 0.55 +0.1 4,055,981 - RR42_RS18715 0.64 +0.5 4,055,995 + RR42_RS18715 0.65 +0.3 4,055,998 + RR42_RS18715 0.66 +0.6 4,055,999 - RR42_RS18715 0.66 +0.5 4,055,999 - RR42_RS18715 0.66 +0.2 4,056,279 + -0.1 4,056,279 + -0.5 4,056,280 - +0.5 4,056,280 - +0.7 4,056,443 - RR42_RS18720 0.14 +0.2 4,056,443 - RR42_RS18720 0.14 -0.4 4,056,448 + RR42_RS18720 0.15 +0.5 4,056,449 - RR42_RS18720 0.15 +1.0 4,056,449 - RR42_RS18720 0.15 +1.3 4,056,449 - RR42_RS18720 0.15 +0.6 4,056,449 - RR42_RS18720 0.15 -0.1 4,056,449 - RR42_RS18720 0.15 -0.1 4,056,478 + RR42_RS18720 0.18 +1.1 4,056,536 + RR42_RS18720 0.24 +0.3 4,057,163 - -0.8 4,057,253 + -0.1 4,057,254 - -0.5 4,057,254 - -0.5 4,057,254 - +0.7 4,057,306 + -0.0 4,057,306 + +0.2 4,057,306 + +0.0 4,057,307 - +0.0 4,057,307 - +0.4 4,057,586 + RR42_RS18725 0.72 -1.7 4,057,586 + RR42_RS18725 0.72 +1.4 4,057,587 - RR42_RS18725 0.72 +3.1 4,057,910 + RR42_RS18730 0.73 +0.7 4,057,911 - RR42_RS18730 0.74 +0.4 4,057,911 - RR42_RS18730 0.74 -1.3 4,058,001 + +1.0 4,058,001 + -0.2
Or see this region's nucleotide sequence