Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18720

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS18710 and RR42_RS18715 are separated by 16 nucleotidesRR42_RS18715 and RR42_RS18720 overlap by 1 nucleotidesRR42_RS18720 and RR42_RS18725 are separated by 113 nucleotidesRR42_RS18725 and RR42_RS18730 are separated by 15 nucleotidesRR42_RS18730 and RR42_RS18735 are separated by 44 nucleotides RR42_RS18710: RR42_RS18710 - endonuclease, at 4,054,434 to 4,055,381 _RS18710 RR42_RS18715: RR42_RS18715 - phage capsid protein, at 4,055,398 to 4,056,312 _RS18715 RR42_RS18720: RR42_RS18720 - hypothetical protein, at 4,056,312 to 4,057,247 _RS18720 RR42_RS18725: RR42_RS18725 - hypothetical protein, at 4,057,361 to 4,057,672 _RS18725 RR42_RS18730: RR42_RS18730 - hypothetical protein, at 4,057,688 to 4,057,990 _RS18730 RR42_RS18735: RR42_RS18735 - DNA-binding protein, at 4,058,035 to 4,058,403 _RS18735 Position (kb) 4056 4057 4058Strain fitness (log2 ratio) -1 0 1 2 3at 4055.334 kb on + strandat 4055.334 kb on + strandat 4055.373 kb on + strandat 4055.374 kb on - strandat 4055.403 kb on - strandat 4055.612 kb on + strand, within RR42_RS18715at 4055.612 kb on + strand, within RR42_RS18715at 4055.613 kb on - strand, within RR42_RS18715at 4055.647 kb on + strand, within RR42_RS18715at 4055.649 kb on - strand, within RR42_RS18715at 4055.899 kb on + strand, within RR42_RS18715at 4055.900 kb on - strand, within RR42_RS18715at 4055.981 kb on - strand, within RR42_RS18715at 4055.995 kb on + strand, within RR42_RS18715at 4055.998 kb on + strand, within RR42_RS18715at 4055.999 kb on - strand, within RR42_RS18715at 4055.999 kb on - strand, within RR42_RS18715at 4056.279 kb on + strandat 4056.279 kb on + strandat 4056.280 kb on - strandat 4056.280 kb on - strandat 4056.443 kb on - strand, within RR42_RS18720at 4056.443 kb on - strand, within RR42_RS18720at 4056.448 kb on + strand, within RR42_RS18720at 4056.449 kb on - strand, within RR42_RS18720at 4056.449 kb on - strand, within RR42_RS18720at 4056.449 kb on - strand, within RR42_RS18720at 4056.449 kb on - strand, within RR42_RS18720at 4056.449 kb on - strand, within RR42_RS18720at 4056.478 kb on + strand, within RR42_RS18720at 4056.536 kb on + strand, within RR42_RS18720at 4057.163 kb on - strandat 4057.253 kb on + strandat 4057.254 kb on - strandat 4057.254 kb on - strandat 4057.254 kb on - strandat 4057.306 kb on + strandat 4057.306 kb on + strandat 4057.306 kb on + strandat 4057.307 kb on - strandat 4057.307 kb on - strandat 4057.586 kb on + strand, within RR42_RS18725at 4057.586 kb on + strand, within RR42_RS18725at 4057.587 kb on - strand, within RR42_RS18725at 4057.910 kb on + strand, within RR42_RS18730at 4057.911 kb on - strand, within RR42_RS18730at 4057.911 kb on - strand, within RR42_RS18730at 4058.001 kb on + strandat 4058.001 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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4,055,334 + -1.5
4,055,334 + -0.8
4,055,373 + +0.6
4,055,374 - +0.3
4,055,403 - +0.3
4,055,612 + RR42_RS18715 0.23 -0.0
4,055,612 + RR42_RS18715 0.23 -0.1
4,055,613 - RR42_RS18715 0.23 +1.1
4,055,647 + RR42_RS18715 0.27 +0.3
4,055,649 - RR42_RS18715 0.27 -0.3
4,055,899 + RR42_RS18715 0.55 +0.1
4,055,900 - RR42_RS18715 0.55 +0.1
4,055,981 - RR42_RS18715 0.64 +0.5
4,055,995 + RR42_RS18715 0.65 +0.3
4,055,998 + RR42_RS18715 0.66 +0.6
4,055,999 - RR42_RS18715 0.66 +0.5
4,055,999 - RR42_RS18715 0.66 +0.2
4,056,279 + -0.1
4,056,279 + -0.5
4,056,280 - +0.5
4,056,280 - +0.7
4,056,443 - RR42_RS18720 0.14 +0.2
4,056,443 - RR42_RS18720 0.14 -0.4
4,056,448 + RR42_RS18720 0.15 +0.5
4,056,449 - RR42_RS18720 0.15 +1.0
4,056,449 - RR42_RS18720 0.15 +1.3
4,056,449 - RR42_RS18720 0.15 +0.6
4,056,449 - RR42_RS18720 0.15 -0.1
4,056,449 - RR42_RS18720 0.15 -0.1
4,056,478 + RR42_RS18720 0.18 +1.1
4,056,536 + RR42_RS18720 0.24 +0.3
4,057,163 - -0.8
4,057,253 + -0.1
4,057,254 - -0.5
4,057,254 - -0.5
4,057,254 - +0.7
4,057,306 + -0.0
4,057,306 + +0.2
4,057,306 + +0.0
4,057,307 - +0.0
4,057,307 - +0.4
4,057,586 + RR42_RS18725 0.72 -1.7
4,057,586 + RR42_RS18725 0.72 +1.4
4,057,587 - RR42_RS18725 0.72 +3.1
4,057,910 + RR42_RS18730 0.73 +0.7
4,057,911 - RR42_RS18730 0.74 +0.4
4,057,911 - RR42_RS18730 0.74 -1.3
4,058,001 + +1.0
4,058,001 + -0.2

Or see this region's nucleotide sequence