Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18030

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS18025 and RR42_RS18030 are separated by 270 nucleotidesRR42_RS18030 and RR42_RS18035 are separated by 94 nucleotidesRR42_RS18035 and RR42_RS18040 are separated by 121 nucleotides RR42_RS18025: RR42_RS18025 - preprotein translocase subunit SecA, at 3,897,721 to 3,900,504 _RS18025 RR42_RS18030: RR42_RS18030 - peptidase M23, at 3,900,775 to 3,901,710 _RS18030 RR42_RS18035: RR42_RS18035 - hypothetical protein, at 3,901,805 to 3,902,317 _RS18035 RR42_RS18040: RR42_RS18040 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, at 3,902,439 to 3,903,356 _RS18040 Position (kb) 3900 3901 3902Strain fitness (log2 ratio) -2 -1 0 1 2at 3900.520 kb on - strandat 3900.520 kb on - strandat 3900.531 kb on - strandat 3900.531 kb on - strandat 3900.607 kb on - strandat 3901.001 kb on + strand, within RR42_RS18030at 3901.002 kb on - strand, within RR42_RS18030at 3901.002 kb on - strand, within RR42_RS18030at 3901.002 kb on - strand, within RR42_RS18030at 3901.260 kb on + strand, within RR42_RS18030at 3901.260 kb on + strand, within RR42_RS18030at 3901.261 kb on - strand, within RR42_RS18030at 3901.261 kb on - strand, within RR42_RS18030at 3901.280 kb on + strand, within RR42_RS18030at 3901.527 kb on - strand, within RR42_RS18030at 3901.681 kb on + strandat 3901.682 kb on - strandat 3901.763 kb on + strandat 3901.793 kb on + strandat 3901.793 kb on + strandat 3901.794 kb on - strandat 3901.794 kb on - strandat 3901.823 kb on + strandat 3902.337 kb on + strandat 3902.337 kb on + strandat 3902.337 kb on + strandat 3902.337 kb on + strandat 3902.337 kb on + strandat 3902.337 kb on + strandat 3902.338 kb on - strandat 3902.338 kb on - strandat 3902.338 kb on - strandat 3902.400 kb on - strandat 3902.400 kb on - strandat 3902.400 kb on - strandat 3902.403 kb on + strandat 3902.403 kb on + strandat 3902.403 kb on + strandat 3902.404 kb on - strandat 3902.404 kb on - strandat 3902.404 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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3,900,520 - -0.5
3,900,520 - -0.5
3,900,531 - -1.0
3,900,531 - -0.2
3,900,607 - +0.7
3,901,001 + RR42_RS18030 0.24 +0.8
3,901,002 - RR42_RS18030 0.24 -0.8
3,901,002 - RR42_RS18030 0.24 -0.4
3,901,002 - RR42_RS18030 0.24 +0.4
3,901,260 + RR42_RS18030 0.52 +0.2
3,901,260 + RR42_RS18030 0.52 +1.0
3,901,261 - RR42_RS18030 0.52 +0.2
3,901,261 - RR42_RS18030 0.52 -0.2
3,901,280 + RR42_RS18030 0.54 +0.1
3,901,527 - RR42_RS18030 0.80 -0.4
3,901,681 + -1.2
3,901,682 - +0.8
3,901,763 + -2.2
3,901,793 + +0.5
3,901,793 + +0.6
3,901,794 - -0.0
3,901,794 - -0.7
3,901,823 + +1.2
3,902,337 + -0.4
3,902,337 + -0.4
3,902,337 + +0.7
3,902,337 + +0.2
3,902,337 + -0.8
3,902,337 + -0.4
3,902,338 - +0.3
3,902,338 - +0.4
3,902,338 - +0.4
3,902,400 - -0.4
3,902,400 - +0.6
3,902,400 - +0.4
3,902,403 + +1.2
3,902,403 + -0.4
3,902,403 + +0.1
3,902,404 - +2.7
3,902,404 - +0.8
3,902,404 - -0.2

Or see this region's nucleotide sequence