Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18025 and RR42_RS18030 are separated by 270 nucleotides RR42_RS18030 and RR42_RS18035 are separated by 94 nucleotides RR42_RS18035 and RR42_RS18040 are separated by 121 nucleotides
RR42_RS18025: RR42_RS18025 - preprotein translocase subunit SecA, at 3,897,721 to 3,900,504
_RS18025
RR42_RS18030: RR42_RS18030 - peptidase M23, at 3,900,775 to 3,901,710
_RS18030
RR42_RS18035: RR42_RS18035 - hypothetical protein, at 3,901,805 to 3,902,317
_RS18035
RR42_RS18040: RR42_RS18040 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, at 3,902,439 to 3,903,356
_RS18040
Position (kb)
3900
3901
3902 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3900.520 kb on - strand at 3900.520 kb on - strand at 3900.531 kb on - strand at 3900.531 kb on - strand at 3900.607 kb on - strand at 3901.001 kb on + strand, within RR42_RS18030 at 3901.002 kb on - strand, within RR42_RS18030 at 3901.002 kb on - strand, within RR42_RS18030 at 3901.002 kb on - strand, within RR42_RS18030 at 3901.260 kb on + strand, within RR42_RS18030 at 3901.260 kb on + strand, within RR42_RS18030 at 3901.261 kb on - strand, within RR42_RS18030 at 3901.261 kb on - strand, within RR42_RS18030 at 3901.280 kb on + strand, within RR42_RS18030 at 3901.527 kb on - strand, within RR42_RS18030 at 3901.681 kb on + strand at 3901.682 kb on - strand at 3901.763 kb on + strand at 3901.793 kb on + strand at 3901.793 kb on + strand at 3901.794 kb on - strand at 3901.794 kb on - strand at 3901.823 kb on + strand at 3902.337 kb on + strand at 3902.337 kb on + strand at 3902.337 kb on + strand at 3902.337 kb on + strand at 3902.337 kb on + strand at 3902.337 kb on + strand at 3902.338 kb on - strand at 3902.338 kb on - strand at 3902.338 kb on - strand at 3902.400 kb on - strand at 3902.400 kb on - strand at 3902.400 kb on - strand at 3902.403 kb on + strand at 3902.403 kb on + strand at 3902.403 kb on + strand at 3902.404 kb on - strand at 3902.404 kb on - strand at 3902.404 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 3,900,520 - -0.5 3,900,520 - -0.5 3,900,531 - -1.0 3,900,531 - -0.2 3,900,607 - +0.7 3,901,001 + RR42_RS18030 0.24 +0.8 3,901,002 - RR42_RS18030 0.24 -0.8 3,901,002 - RR42_RS18030 0.24 -0.4 3,901,002 - RR42_RS18030 0.24 +0.4 3,901,260 + RR42_RS18030 0.52 +0.2 3,901,260 + RR42_RS18030 0.52 +1.0 3,901,261 - RR42_RS18030 0.52 +0.2 3,901,261 - RR42_RS18030 0.52 -0.2 3,901,280 + RR42_RS18030 0.54 +0.1 3,901,527 - RR42_RS18030 0.80 -0.4 3,901,681 + -1.2 3,901,682 - +0.8 3,901,763 + -2.2 3,901,793 + +0.5 3,901,793 + +0.6 3,901,794 - -0.0 3,901,794 - -0.7 3,901,823 + +1.2 3,902,337 + -0.4 3,902,337 + -0.4 3,902,337 + +0.7 3,902,337 + +0.2 3,902,337 + -0.8 3,902,337 + -0.4 3,902,338 - +0.3 3,902,338 - +0.4 3,902,338 - +0.4 3,902,400 - -0.4 3,902,400 - +0.6 3,902,400 - +0.4 3,902,403 + +1.2 3,902,403 + -0.4 3,902,403 + +0.1 3,902,404 - +2.7 3,902,404 - +0.8 3,902,404 - -0.2
Or see this region's nucleotide sequence